Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045595_P001 | Maize | cytosol, mitochondrion, nucleus | 7.81 | 74.19 |
| Zm00001d030829_P001 | Maize | mitochondrion | 8.21 | 72.5 |
| GSMUA_Achr1P09530_001 | Banana | mitochondrion | 3.0 | 71.62 |
| Os06t0652000-01 | Rice | plastid | 31.01 | 67.99 |
| HORVU7Hr1G112980.9 | Barley | mitochondrion, nucleus, plastid | 31.92 | 65.96 |
| TraesCS7B01G411000.1 | Wheat | nucleus | 28.18 | 64.76 |
| Zm00001d021198_P001 | Maize | cytosol | 8.6 | 62.3 |
| TraesCS7A01G503900.1 | Wheat | plastid | 33.28 | 61.96 |
| EER88745 | Sorghum | plastid | 33.16 | 61.11 |
| Zm00001d007570_P001 | Maize | cytosol | 5.21 | 60.53 |
| Zm00001d026323_P001 | Maize | cytosol | 5.15 | 59.87 |
| Zm00001d014049_P001 | Maize | mitochondrion | 6.85 | 59.31 |
| Zm00001d046835_P002 | Maize | plastid | 33.05 | 58.93 |
| Zm00001d023696_P001 | Maize | plastid | 8.38 | 58.5 |
| Zm00001d043127_P001 | Maize | endoplasmic reticulum | 10.41 | 57.86 |
| GSMUA_Achr3P28120_001 | Banana | mitochondrion | 31.3 | 57.42 |
| Zm00001d034215_P001 | Maize | mitochondrion | 5.6 | 56.9 |
| GSMUA_Achr1P09560_001 | Banana | mitochondrion, nucleus, plastid | 3.9 | 56.1 |
| Zm00001d044404_P001 | Maize | mitochondrion | 3.68 | 53.28 |
| Zm00001d035375_P002 | Maize | mitochondrion, nucleus | 3.68 | 52.42 |
| GSMUA_Achr1P09540_001 | Banana | vacuole | 6.28 | 47.84 |
| Zm00001d043100_P001 | Maize | endoplasmic reticulum, extracellular | 4.7 | 45.11 |
| GSMUA_Achr1P09550_001 | Banana | mitochondrion | 8.15 | 39.02 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.1320.10 | Gene3D:1.10.150.20 | Gene3D:1.10.287.260 | Gene3D:1.10.287.280 |
| Gene3D:1.25.40.180 | MapMan:15.6.1.1 | MapMan:17.4.2.4.2 | Gene3D:3.30.70.370 | InterPro:ARM-type_fold | ncoils:Coil |
| InterPro:DNA-dir_RNA_pol_helix_hairp_sf | InterPro:DNA-dir_Rpol_phage-type | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 |
| EnsemblPlantsGene:GSMUA_Achr1G15880_001 | EnsemblPlants:GSMUA_Achr1P15880_001 | EnsemblPlants:GSMUA_Achr1T15880_001 | InterPro:IPR003891 | InterPro:IPR016021 | InterPro:IPR024075 |
| InterPro:IPR037159 | InterPro:Initiation_fac_eIF4g_MI | UniProt:M0S096 | InterPro:MIF4-like_sf | InterPro:MIF4G-like_typ-3 | PFAM:PF00940 |
| PFAM:PF02847 | PFAM:PF02854 | PFAM:PF14700 | ScanProsite:PS00489 | ScanProsite:PS00900 | PFscan:PS51366 |
| PANTHER:PTHR10102 | PANTHER:PTHR10102:SF1 | InterPro:RNA_POL_N_sf | InterPro:RPOL_N | SMART:SM00543 | SMART:SM00544 |
| SMART:SM01311 | SUPFAM:SSF48371 | SUPFAM:SSF56672 | UniParc:UPI000296212C | SEG:seg | : |
Description
DNA-directed RNA polymerase 3, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G15880_001]
Coordinates
chr1:+:11888247..11912829
Molecular Weight (calculated)
198373.0 Da
IEP (calculated)
8.694
GRAVY (calculated)
-0.356
Length
1767 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQSDPAVISL RPGGGGGGGN RGSRLLATRF DTGALGAAAS LSSSDISALR PHGGVGLALS LKTGDSRFES RERIRYTKDQ LLQVREHAET PEDILKIKQE
0101: IEADLSIEDQ TWGHSENILP SQSQSHYYEQ DNRDWRDRSG QLSSFRDENL DNKESNISSS RVEINQLNRQ DQLNSHFSSK VQVSSTQAGK NTLIKAEVPW
0201: SVRRGNLSEK ERVLKTVKGI LNKLTPEKFD ILKGQLIDAG ITTPDILKDV ITLIFEKAVF EPTFCPMYAQ LCFDLNEKLL PFPPEEVGGR EITFKRILLN
0301: NCQEAFEGAD NLRAEIRKLN DPDQEIERRD KERMVKLRTL GNIRLIGELL KQKMVPEKIV HHIVQELLGH DSKSCPAEEN VEAICQLFNT IGKQLDESPK
0401: SRRFNDAYFN RLKELTTNPQ LVSRLRFMVR DVLDMRANNW VPRREEVKAK KITEIHSEAE KNLGLRPGAT ASLRNSRNAG SLGSVSPGGL PVSRPGTGGM
0501: MPGMPGGPLA AKSSSINPKL LPQGSGGRIA GVTSALLQGN GPLSRPSGLV TAATGSTAQK LPLRPVGQVP TPLIPDKPVL TSKFNPNELH KKTVALLEEY
0601: FHIRLLDEAL QCIAELNSPE YHPEVVKEAI NMALEKGPSC VELVVKLLEY LIVEKIFAPR DLGTGCLLYA ATLDDIGIDL PKAPIFFGEV VSKLVLAGGV
0701: DFKVVEEILK KVEDSRFQAT IFDVVVKVVK ASPNGQTVLS GQEAMVRACE KLLSRQKPSE NSVLHLPFPA CLTSTRPRPV PSRCVPLSAL RSSPFPLRSE
0801: PQEPEDSFPV VFSQISPLQS PLVLDPDDVV DDDAAGYLNG AYNSSWLGRG IALDFPGEAV KRVICEEPAW IPPGYSIELV AGSHVGNLES RRAERRKYNS
0901: LRRRQIKAET EAWERAAQEY KELEREMLEK KLAPSLPYVK SLFLGWFEPL RDVIEREQRL QKTKMQKAAY APHIGLLPAD KMAVIVMHKM MGLLMVGQED
1001: GCIRLVQAAI RIGEAIEQEF KIQAYLEKSK RPRRRKNEGD RNVILCTQQE ILRKKVMKLI KMKKLIEVQK LLRNEIEMES WGRDGQAKLG SRLIELLLES
1101: AFVQVPCDSL ADCPPEILPA FRHTFKNISK ENGKSINRYG VIECDPLVHK GFDSTARHMV IPYLPMLIPP KSWKGYDNGG HLFLPSYVMR THGAQEQQKA
1201: IKSVPRKQLQ KVFEALDTLG RTKWRINRRI LDVIEIVWSR GGGIAGLVDR KDIQLPDRPE TEDLTEIKKW RWSTRKAKKA NSEMHAQRCD VELKLSVAHK
1301: MRDEEGFYYP HNIDFRGRAY PMHSHLNHLS SDLCRGILEF AEGKPLGKSG LHWLKIHLAN IYGGGVEKLS YDRRLTFVKN HLRDIFDSAE NPIDGNRWWI
1401: SAEDPFQCLA ACIDLTKALK SSSPHMAISH LPIHQDGSCN GLQHYAALGR DSLEAAAVNL VAGEKPADVY SEIAMRVREI IRKDSEKDPT VDPTALLAKV
1501: LVDQVDRKLV KQTVMTSVYG VTYVGAREQI KRRLEEKGLI TDDRLLFGAS CYAAKVTLNA LGEMFEAARG IMKWLGDCAK IIASENEPVK WTTPLGLPVV
1601: QPYRNSERHQ IRTSLQVLTL QREGQSQVSV KRQKTAFPPN YVHSLDGSHM MMTAISCKNA GLHFAGVHDS FWTHACDVDR MNQILREEFV ALYNIPILEN
1701: LLDGFQTSFP TLTFPPLPDR GDFDLKKVLE QNNNIFSFFF IDTCTIFWEK LVIHQINLFQ IARIFAW
0101: IEADLSIEDQ TWGHSENILP SQSQSHYYEQ DNRDWRDRSG QLSSFRDENL DNKESNISSS RVEINQLNRQ DQLNSHFSSK VQVSSTQAGK NTLIKAEVPW
0201: SVRRGNLSEK ERVLKTVKGI LNKLTPEKFD ILKGQLIDAG ITTPDILKDV ITLIFEKAVF EPTFCPMYAQ LCFDLNEKLL PFPPEEVGGR EITFKRILLN
0301: NCQEAFEGAD NLRAEIRKLN DPDQEIERRD KERMVKLRTL GNIRLIGELL KQKMVPEKIV HHIVQELLGH DSKSCPAEEN VEAICQLFNT IGKQLDESPK
0401: SRRFNDAYFN RLKELTTNPQ LVSRLRFMVR DVLDMRANNW VPRREEVKAK KITEIHSEAE KNLGLRPGAT ASLRNSRNAG SLGSVSPGGL PVSRPGTGGM
0501: MPGMPGGPLA AKSSSINPKL LPQGSGGRIA GVTSALLQGN GPLSRPSGLV TAATGSTAQK LPLRPVGQVP TPLIPDKPVL TSKFNPNELH KKTVALLEEY
0601: FHIRLLDEAL QCIAELNSPE YHPEVVKEAI NMALEKGPSC VELVVKLLEY LIVEKIFAPR DLGTGCLLYA ATLDDIGIDL PKAPIFFGEV VSKLVLAGGV
0701: DFKVVEEILK KVEDSRFQAT IFDVVVKVVK ASPNGQTVLS GQEAMVRACE KLLSRQKPSE NSVLHLPFPA CLTSTRPRPV PSRCVPLSAL RSSPFPLRSE
0801: PQEPEDSFPV VFSQISPLQS PLVLDPDDVV DDDAAGYLNG AYNSSWLGRG IALDFPGEAV KRVICEEPAW IPPGYSIELV AGSHVGNLES RRAERRKYNS
0901: LRRRQIKAET EAWERAAQEY KELEREMLEK KLAPSLPYVK SLFLGWFEPL RDVIEREQRL QKTKMQKAAY APHIGLLPAD KMAVIVMHKM MGLLMVGQED
1001: GCIRLVQAAI RIGEAIEQEF KIQAYLEKSK RPRRRKNEGD RNVILCTQQE ILRKKVMKLI KMKKLIEVQK LLRNEIEMES WGRDGQAKLG SRLIELLLES
1101: AFVQVPCDSL ADCPPEILPA FRHTFKNISK ENGKSINRYG VIECDPLVHK GFDSTARHMV IPYLPMLIPP KSWKGYDNGG HLFLPSYVMR THGAQEQQKA
1201: IKSVPRKQLQ KVFEALDTLG RTKWRINRRI LDVIEIVWSR GGGIAGLVDR KDIQLPDRPE TEDLTEIKKW RWSTRKAKKA NSEMHAQRCD VELKLSVAHK
1301: MRDEEGFYYP HNIDFRGRAY PMHSHLNHLS SDLCRGILEF AEGKPLGKSG LHWLKIHLAN IYGGGVEKLS YDRRLTFVKN HLRDIFDSAE NPIDGNRWWI
1401: SAEDPFQCLA ACIDLTKALK SSSPHMAISH LPIHQDGSCN GLQHYAALGR DSLEAAAVNL VAGEKPADVY SEIAMRVREI IRKDSEKDPT VDPTALLAKV
1501: LVDQVDRKLV KQTVMTSVYG VTYVGAREQI KRRLEEKGLI TDDRLLFGAS CYAAKVTLNA LGEMFEAARG IMKWLGDCAK IIASENEPVK WTTPLGLPVV
1601: QPYRNSERHQ IRTSLQVLTL QREGQSQVSV KRQKTAFPPN YVHSLDGSHM MMTAISCKNA GLHFAGVHDS FWTHACDVDR MNQILREEFV ALYNIPILEN
1701: LLDGFQTSFP TLTFPPLPDR GDFDLKKVLE QNNNIFSFFF IDTCTIFWEK LVIHQINLFQ IARIFAW
001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN
Arabidopsis Description
RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.