CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	18.14	93.55
Zm00001d026323_P001	Maize	cytosol	14.81	93.42
Zm00001d007570_P001	Maize	cytosol	14.7	92.76
Zm00001d046835_P002	Maize	plastid	94.68	91.62
Zm00001d030829_P001	Maize	mitochondrion	18.87	90.5
Os06t0652000-01	Rice	plastid	75.81	90.2
Zm00001d021198_P001	Maize	cytosol	22.31	87.7
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	77.27	86.67
TraesCS7A01G503900.1	Wheat	plastid	84.15	85.04
TraesCS7B01G411000.1	Wheat	nucleus	66.94	83.48
Zm00001d014049_P001	Maize	mitochondrion	16.27	76.47
Zm00001d023696_P001	Maize	plastid	19.81	75.1
Zm00001d034215_P001	Maize	mitochondrion	13.45	74.14
Zm00001d043127_P001	Maize	endoplasmic reticulum	24.09	72.64
PGSC0003DMT400028972	Potato	mitochondrion	35.35	71.97
KRH63115	Soybean	mitochondrion	39.31	68.92
Zm00001d035375_P002	Maize	mitochondrion, nucleus	8.86	68.55
Zm00001d044404_P001	Maize	mitochondrion	8.65	68.03
VIT_01s0010g03250.t01	Wine grape	cytosol	3.34	64.0
KRH63538	Soybean	cytosol, mitochondrion, nucleus	9.18	58.28
CDY34797	Canola	plastid	55.37	55.31
VIT_11s0037g00630.t01	Wine grape	plastid	56.41	55.26
CDX76837	Canola	plastid	55.79	55.1
CDY39695	Canola	plastid	55.27	54.47
Bra039230.1-P	Field mustard	plastid	55.58	54.44
CDY20283	Canola	plastid	54.85	53.89
Solyc07g005930.2.1	Tomato	nucleus	55.47	53.63
Bra032120.1-P	Field mustard	plastid	52.45	53.51
AT2G24120.1	Thale cress	plastid	55.37	53.47
KRH03007	Soybean	plastid	52.45	52.89
OQU90275	Sorghum	mitochondrion	53.7	52.77
KRH54896	Soybean	plastid	53.18	52.42
KRH72339	Soybean	cytosol, mitochondrion, nucleus	15.33	50.87
CDY44514	Canola	cytosol	6.36	48.8
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	61.11	33.16

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	UniProt:C5Z753	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type
EnsemblPlants:EER88745	ProteinID:EER88745	ProteinID:EER88745.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	InterPro:IPR024075	InterPro:IPR037159
PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1
InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	EnsemblPlantsGene:SORBI_3010G211500	SUPFAM:SSF56672	UniParc:UPI0007F1F2BF
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:55450139..55459589

Molecular Weight (calculated)

109045.0 Da

IEP (calculated)

8.529

GRAVY (calculated)

-0.442

Length

959 amino acids

Sequence
(BLAST)

001: MPLLLYPFSA CVPPPRALLR RLSPPPPMAA VAPPPPSVRI LTSVGTLTDL PALPPPPTDD FHWLDLFAFL NSPADTYHHQ IPPQPPQDEG EEEREAGLEL
101: ELELELERHA EMERQRERAR RAQHRRLRQR QVKAETEAWA RAAEEYREIE REMLDRRLAP ALPYVKSLFV GWFEPLRDAI ARDQDVQRRK RVKHVYAKYL
201: LLLPADKVAV IVMHKMMGLL MSSKDGTGSV RVVQAAHCIG EAVEREFKVQ SFFQKSRKKK DQGENDPALE KEQAKCRKRV KTLVKRRKMS EAQKLVQQEL
301: ELEEWGTEAQ VKLGSRLIEL LLDSAFVQPP ADQIPDSSPD IRPAFKHVLR QPIIENGRLK KKHWVIECDH LVHDGFESTA RHVDIPYLPM LVPPKKWKGY
401: NKGGHLFLPS YIMRTHGVKD QKDAINSVPR KQLRKVFEAL DILGSTKWRV NRRVHDVVET IWSRGGGIAG LVDKANIPLP ERPESEDPDE MQKWKWSLKK
501: AKKTNRELHA ERCDTELKLS VARKMREEDG FYYPHNLDFR GRAYPMHPHL SHLGSDLCRG VLEYAEGRPL GKSGLCWLKI HLANKYGGGV EKLSHEGKLA
601: FVENQLLDIF DSAANPVDGN CWWTNAEDPF QCLAACMDLS DALNSPSPYR TVSHLPIHQD GSCNGLQHYA ALGRDYMGAV AVNLVPGEKP ADIYSEIAAR
701: VLNVVREDSM KDPATNPTAS LARVLVDQVD RKLVKQTVMT SVYGVTYIGA RQQITKRLQE KGLIADDKLL YDVSCYATRV TLDALGQMFQ SARGIMAWLG
801: DCAKMIASKN QPVKWTSPVG LPVVQPYKKY KNYMIRTSLQ CLALRREGDA IAIQRQKAAF PPNFVHSLDS SHMMMTAIAC KEAGLHFAGV HDSFWVHACD
901: VDQMNQILRQ QFVELYSMPI LDNLLEEFQM AFPTLEFPPC PPQGNFDVRE VLTSTYFFN

Best Arabidopsis Sequence Match ( AT2G24120.1 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.