Factsheet for Zm00001d043127_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

mitochondrion 2
endoplasmic reticulum 4
extracellular 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	54.72	93.55
Zm00001d030829_P001	Maize	mitochondrion	55.97	89.0
Zm00001d014049_P001	Maize	mitochondrion	46.86	73.04
Zm00001d023696_P001	Maize	plastid	56.92	71.54
Zm00001d035375_P002	Maize	mitochondrion, nucleus	27.67	70.97
Zm00001d034215_P001	Maize	mitochondrion	37.74	68.97
Zm00001d044404_P001	Maize	mitochondrion	23.58	61.48
VIT_01s0010g03250.t01	Wine grape	cytosol	9.12	58.0
Zm00001d021198_P001	Maize	cytosol	29.25	38.11
CDY44514	Canola	cytosol	13.21	33.6
PGSC0003DMT400028972	Potato	mitochondrion	47.48	32.06
KRH63115	Soybean	mitochondrion	54.72	31.81
TraesCS7B01G411000.1	Wheat	nucleus	67.92	28.09
Os06t0652000-01	Rice	plastid	68.24	26.92
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	68.24	25.38
EER88745	Sorghum	plastid	72.64	24.09
Zm00001d046835_P002	Maize	plastid	74.84	24.02
TraesCS7A01G503900.1	Wheat	plastid	69.18	23.18
CDY34797	Canola	plastid	56.92	18.85
CDX76837	Canola	plastid	57.23	18.74
KRH03007	Soybean	plastid	55.35	18.51
KRH54896	Soybean	plastid	56.6	18.5
VIT_11s0037g00630.t01	Wine grape	plastid	56.92	18.49
Bra039230.1-P	Field mustard	plastid	56.92	18.49
Solyc07g005930.2.1	Tomato	nucleus	57.23	18.35
CDY39695	Canola	plastid	55.97	18.29
CDY20283	Canola	plastid	55.97	18.24
Zm00001d022169_P001	Maize	mitochondrion	55.35	18.05
AT2G24120.1	Thale cress	plastid	56.29	18.03
Bra032120.1-P	Field mustard	plastid	50.94	17.23
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	8.81	15.22
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	57.86	10.41
KRH72339	Soybean	cytosol, mitochondrion, nucleus	5.35	5.88
KRH63538	Soybean	cytosol, mitochondrion, nucleus	0.94	1.99
Zm00001d007570_P001	Maize	cytosol	0.63	1.32
Zm00001d026323_P001	Maize	cytosol	0.63	1.32

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.287.280	MapMan:15.6.1.1	UniProt:A0A1D6N946	InterPro:DA1-like
InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	ProteinID:ONM37067.1
PFAM:PF00940	PFAM:PF12315	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	SUPFAM:SSF56672
TMHMM:TMhelix	UniParc:UPI0008450AF3	EnsemblPlantsGene:Zm00001d043127	EnsemblPlants:Zm00001d043127_P001	EnsemblPlants:Zm00001d043127_T001	SEG:seg

Description

DNA-directed RNA polymerase 3 chloroplastic

Coordinates

chr3:+:189824699..189827996

Molecular Weight (calculated)

35786.5 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.084

Length

318 amino acids

Sequence
(BLAST)

001: MITGPYKLIR QCEVTAILIL YELPRLLTGS ILAHEMVHAY LRLTVLACCQ TLDILGSTKW RVNRRVHDVV ETILSQGGGF AGLVDKANKW KWSLKKAKKT
101: NRELHAERCD SELKLLILWC SLYAIALLEL YLFLFCKRVA RKLRDKDGFY YPHNLDFRGR AYPMHPHLSH LGSDLCRGVL EYAEGRPLGK YGLCWLKIHL
201: ANKYGGGIEK LSHEGKLAFV ENQLFDIFDS AANPVDGNCW WTNVEDPFQC LAPCMDLSDA LRSPSPYHAV SHLPIHQDGS CNGLQHYAAL GRDYMGAVAV
301: NLVPGEKPAD IYSEIASG

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.