Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 5
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P28120_001 | Banana | mitochondrion | 77.03 | 5.92 |
| GSMUA_Achr1P15880_001 | Banana | cytosol, mitochondrion, nucleus | 71.62 | 3.0 |
| GSMUA_Achr1P09550_001 | Banana | mitochondrion | 13.51 | 2.71 |
| GSMUA_Achr1P09540_001 | Banana | vacuole | 4.05 | 1.29 |
| GSMUA_Achr1P09560_001 | Banana | mitochondrion, nucleus, plastid | 0.0 | 0.0 |
| VIT_01s0010g03200.t01 | Wine grape | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.1320.10 | MapMan:15.6.1.1 | InterPro:DNA-dir_Rpol_phage-type | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| EnsemblPlantsGene:GSMUA_Achr1G09530_001 | EnsemblPlants:GSMUA_Achr1P09530_001 | EnsemblPlants:GSMUA_Achr1T09530_001 | InterPro:IPR037159 | UniProt:M0RYG2 | PFAM:PF14700 |
| PANTHER:PTHR10102 | PANTHER:PTHR10102:SF4 | InterPro:RNA_POL_N_sf | InterPro:RPOL_N | SUPFAM:SSF56672 | UniParc:UPI000295AFED |
Description
DNA-directed RNA polymerase 2, chloroplastic/mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr1G09530_001]
Coordinates
chr1:+:7313869..7314093
Molecular Weight (calculated)
9041.1 Da
IEP (calculated)
9.844
GRAVY (calculated)
-0.688
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MRARKYYVLR QRQIKIETDA WEQAAKEYKE LLTNMCERKL APNLPYVKSL FLGWFEPLRD RIAMEQEQCR GFKI
001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVKPICL FLCFH
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVKPICL FLCFH
Arabidopsis Description
RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.