Factsheet for VIT_03s0038g04080.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66310	Soybean	nucleus	79.51	80.5
KRH48974	Soybean	plastid	77.56	78.11
GSMUA_Achr8P25460_001	Banana	mitochondrion	77.74	77.06
CDX84484	Canola	plastid	77.03	77.03
AT5G64050.1	Thale cress	mitochondrion	77.56	77.02
CDY43784	Canola	plastid	76.86	76.86
Solyc01g112290.2.1	Tomato	plastid	77.03	76.49
Os02t0121000-01	Rice	plastid	76.33	76.19
Zm00001d026115_P001	Maize	cytosol	24.56	75.14
Zm00001d015037_P002	Maize	mitochondrion, plastid	74.38	74.78
EES06189	Sorghum	mitochondrion, plastid	74.73	74.08
TraesCS6A01G070500.1	Wheat	plastid	73.14	74.06
TraesCS6B01G094500.1	Wheat	mitochondrion, plastid	73.14	73.93
TraesCS6D01G068300.1	Wheat	mitochondrion, plastid	72.79	73.7
Bra024262.1-P	Field mustard	plastid	75.09	72.77
HORVU6Hr1G012710.2	Barley	cytosol, plastid	72.79	71.9
Zm00001d053901_P001	Maize	mitochondrion, plastid	74.03	71.75
Zm00001d053389_P001	Maize	cytosol	15.19	71.07
GSMUA_Achr11P...	Banana	cytosol	6.89	66.1
Zm00001d003735_P001	Maize	cytosol	4.24	54.55
Zm00001d012985_P001	Maize	cytosol, extracellular	4.59	46.43

Protein Annotations

KEGG:00860+6.1.1.17	KEGG:00970+6.1.1.17	Gene3D:1.10.10.350	EntrezGene:100250310	wikigene:100250310	MapMan:17.2.7
Gene3D:3.40.50.620	MapMan:7.12.1.1	EMBL:AM454433	ProteinID:CAN72214	ProteinID:CAN72214.1	ProteinID:CBI37719
ProteinID:CBI37719.3	UniProt:D7U4Q0	EMBL:FN596508	GO:GO:0000003	GO:GO:0000049	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004812	GO:GO:0004818
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006424	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0016874	GO:GO:0019538
GO:GO:0043039	GO:GO:0048481	InterPro:Glu-tRNA-ligase_bac/mito	InterPro:Glu/Gln-tRNA-synth	InterPro:Glu/Gln-tRNA-synth_Ib_cat-dom	InterPro:GluRS_core
InterPro:IPR014729	InterPro:IPR020751	EntrezGene:LOC100250310	wikigene:LOC100250310	HAMAP:MF_00022	PFAM:PF00749
PRINTS:PR00987	ScanProsite:PS00178	PANTHER:PTHR43311	PANTHER:PTHR43311:SF2	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48163
SUPFAM:SSF52374	TIGR:TC64709	TIGR:TC65437	TIGRFAMs:TIGR00464	UniParc:UPI00015C8CE2	ArrayExpress:VIT_03s0038g04080
EnsemblPlantsGene:VIT_03s0038g04080	EnsemblPlants:VIT_03s0038g04080.t01	unigene:Vvi.15056	RefSeq:XP_002283154	RefSeq:XP_002283154.1	InterPro:aa-tRNA-synth_I_CS
InterPro:aa-tRNA-synth_I_codon-bd	InterPro:aa-tRNA-synth_I_codon-bd_sub2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:2937549..2942542

Molecular Weight (calculated)

63053.8 Da

IEP (calculated)

7.633

GRAVY (calculated)

-0.280

Length

566 amino acids

Sequence
(BLAST)

001: MASLVGSPWM KIRVIPEVAP PILRRSSSLF RRSFSVSCST EAPPKKLEGE VRVRFAPSPT GNLHVGGART ALFNYLFARS KGGKFVLRIE DTDLERSTKQ
101: SEEALLQDLS WLGLHWDEGP GVGGDYGPYR QSERNSLYKQ YAEKLLESGH VYQCFCSNEE LEKMKEIAKL KQLPPVYTGK WASATAEEVQ EELERGTPYT
201: YRFRVPKEGS LKIDDLIRGE VRWNLDTLGD FVIMRSNGQP VYNFCVTVDD ATMAISHVIR AEEHLPNTLR QALLYKALGF AMPSFAHVSL ILAPDRSKLS
301: KRHGATSVGQ FKEMGFLPQA MVNYLALLGW GDGTENEFFT LKHLVEKFSI DRVNKGGAIF DSTKLRWMNG QHLRSLPSEE LTKLIGERWK NTGILTQSDG
401: PFIEEAVALL KDGIDLITDS DKALSNLLSY PLYATLTSPE GKPVLEDKLS EVSSSLLAAY DSGELLQALE EGPAGWQKWV KSFGKSLKRK GKSLFMPLRV
501: LLTGKLHGPD MGASVLLLHR AGTCGVVAPQ VGFVTLEDRF KMLREVEWEA LNKDQPPLES AAPAIN

Best Arabidopsis Sequence Match ( AT5G64050.1 )
(BLAST)

001: MASLVYGTPW LRVRSLPELA PAFLRRRQSS LFYCSRRSFA VVACSTPVNN GGSVRVRFAP SPTGNLHVGG ARTALFNYLF ARSKGGKFVL RIEDTDLERS
101: TRESEAAVLQ DLSWLGLDWD EGPGVSGDFG PYRQSERNAL YKQYAEKLLE SGHVYRCFCS SEELVKMKEN AKLKQLPPVY TGKWATASDA EIEQELEKGT
201: PFTYRFRVPK EGSLKINDLI RGEVCWNLDT LGDFVVMRSN GQPVYNFCVT VDDATMAISH VIRAEEHLPN TLRQALIYKA LKFPMPQFAH VSLILAPDRS
301: KLSKRHGATS VGQYREMGYL PQGMVNYLAL LGWGDGTENE FFTLEDLVEK FSIERVNKSG AIFDSTKLRW MNGQHLRALP NEKLTKLVGE RWKSAGILTE
401: SEGSFVNEAV ELLKDGIELV TDSDKVLLNL LSYPLHATLA SPEAKPAVED KLHEVAASLI AAYDSGEIPS ALEEGQGAWQ KWVKAFGKSL KRKGKSLFMP
501: LRVLLTGKLH GPEMGTSIVL IYKAGSPGIV VPQAGFVSME ERFKILREID WEALNKDESV PLESTATVST

Arabidopsis Description

OVA3Glutamate--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FEA2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.