Factsheet for Solyc01g112290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g04080.t01	Wine grape	plastid	76.49	77.03
KRH48974	Soybean	plastid	74.74	75.8
KRH66310	Soybean	nucleus	73.68	75.13
Zm00001d026115_P001	Maize	cytosol	24.04	74.05
AT5G64050.1	Thale cress	mitochondrion	73.68	73.68
CDX84484	Canola	plastid	72.98	73.5
CDY43784	Canola	plastid	72.98	73.5
GSMUA_Achr8P25460_001	Banana	mitochondrion	72.63	72.5
Os02t0121000-01	Rice	plastid	71.23	71.6
Zm00001d053389_P001	Maize	cytosol	15.09	71.07
TraesCS6B01G094500.1	Wheat	mitochondrion, plastid	69.82	71.07
TraesCS6A01G070500.1	Wheat	plastid	69.47	70.84
Zm00001d015037_P002	Maize	mitochondrion, plastid	69.82	70.69
TraesCS6D01G068300.1	Wheat	mitochondrion, plastid	69.12	70.48
EES06189	Sorghum	mitochondrion, plastid	70.53	70.4
Bra024262.1-P	Field mustard	plastid	71.23	69.52
HORVU6Hr1G012710.2	Barley	cytosol, plastid	69.47	69.11
Zm00001d053901_P001	Maize	mitochondrion, plastid	70.35	68.66
GSMUA_Achr11P...	Banana	cytosol	5.96	57.63
Zm00001d003735_P001	Maize	cytosol	4.21	54.55
Zm00001d012985_P001	Maize	cytosol, extracellular	4.56	46.43

Protein Annotations

KEGG:00860+6.1.1.17	KEGG:00970+6.1.1.17	Gene3D:1.10.10.350	MapMan:17.2.7	Gene3D:3.40.50.620	MapMan:7.12.1.1
GO:GO:0000003	GO:GO:0000049	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004812	GO:GO:0004818	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006424	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0016874	GO:GO:0019538	GO:GO:0043039	GO:GO:0048481	InterPro:Glu-tRNA-ligase_bac/mito
InterPro:Glu/Gln-tRNA-synth	InterPro:Glu/Gln-tRNA-synth_Ib_cat-dom	InterPro:GluRS_core	InterPro:IPR014729	InterPro:IPR020751	UniProt:K4B490
HAMAP:MF_00022	PFAM:PF00749	PRINTS:PR00987	ScanProsite:PS00178	PANTHER:PTHR43311	PANTHER:PTHR43311:SF2
InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48163	SUPFAM:SSF52374	EnsemblPlantsGene:Solyc01g112290.2	EnsemblPlants:Solyc01g112290.2.1	TIGRFAMs:TIGR00464
UniParc:UPI0002767C9A	InterPro:aa-tRNA-synth_I_CS	InterPro:aa-tRNA-synth_I_codon-bd	InterPro:aa-tRNA-synth_I_codon-bd_sub2	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:98353467..98368740

Molecular Weight (calculated)

63823.5 Da

IEP (calculated)

8.501

GRAVY (calculated)

-0.268

Length

570 amino acids

Sequence
(BLAST)

001: MATVAAAPWF RARLIPELKS RQSLLYCRNG PRRYPQSLCF RRRSFSIYAS AGDEGAVRVR FAPSPTGNLH VGGARTALFN YLYARSKGGK FVLRIEDTDL
101: ERSTRESEEA VLRDLSWLGL AWDEGPGIGG NYGPYRQSER NALYKEFAEK LLQSGHVYRC FCSNEELEKM KEMAKLKQLP PVYTGRWASA TEQEVLEELT
201: KGTPYTYRFR VPKEGSLKID DLIRGEVSWN FDTLGDFVIM RSNGQPVYNF CVTVDDATMA ISHVIRAEEH LPNTLRQALI YKALGFPMPH FAHVSLILAP
301: DRSKLSKRHG ATSVGQFRDM GYLPQAMVNY LALLGWGDGT ENEFFSLEQL VEKFTIERVN KSGAIFDSTK LRWMNGQHLR SLPSEELNQI IGERWKDADI
401: VTESQGVFVQ DAVLLLKDGI DLIPDSEKAL SSLLSYPLYE TLTSTEGKLI LEDGVSEVAK SLLAAYDSGE LCGALAEGQP GWRNWVKKFG KLLKRKGKSL
501: FMPLRVLLTG KLHGPDIGAT TVLLYKAGTS GSVAPQAGFV TFDERFKILR EVQWESFSSN VPLSAGVVTH

Best Arabidopsis Sequence Match ( AT5G64050.1 )
(BLAST)

001: MASLVYGTPW LRVRSLPELA PAFLRRRQSS LFYCSRRSFA VVACSTPVNN GGSVRVRFAP SPTGNLHVGG ARTALFNYLF ARSKGGKFVL RIEDTDLERS
101: TRESEAAVLQ DLSWLGLDWD EGPGVSGDFG PYRQSERNAL YKQYAEKLLE SGHVYRCFCS SEELVKMKEN AKLKQLPPVY TGKWATASDA EIEQELEKGT
201: PFTYRFRVPK EGSLKINDLI RGEVCWNLDT LGDFVVMRSN GQPVYNFCVT VDDATMAISH VIRAEEHLPN TLRQALIYKA LKFPMPQFAH VSLILAPDRS
301: KLSKRHGATS VGQYREMGYL PQGMVNYLAL LGWGDGTENE FFTLEDLVEK FSIERVNKSG AIFDSTKLRW MNGQHLRALP NEKLTKLVGE RWKSAGILTE
401: SEGSFVNEAV ELLKDGIELV TDSDKVLLNL LSYPLHATLA SPEAKPAVED KLHEVAASLI AAYDSGEIPS ALEEGQGAWQ KWVKAFGKSL KRKGKSLFMP
501: LRVLLTGKLH GPEMGTSIVL IYKAGSPGIV VPQAGFVSME ERFKILREID WEALNKDESV PLESTATVST

Arabidopsis Description

OVA3Glutamate--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FEA2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.