Factsheet for Zm00001d053389_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026115_P001	Maize	cytosol	83.47	54.59
Zm00001d053901_P001	Maize	mitochondrion, plastid	83.47	17.29
Zm00001d015037_P002	Maize	mitochondrion, plastid	77.69	16.7
CDX84484	Canola	plastid	76.03	16.25
CDY43784	Canola	plastid	76.03	16.25
KRH66310	Soybean	nucleus	74.38	16.1
Bra024262.1-P	Field mustard	plastid	77.69	16.1
KRH48974	Soybean	plastid	73.55	15.84
AT5G64050.1	Thale cress	mitochondrion	72.73	15.44
VIT_03s0038g04080.t01	Wine grape	plastid	71.07	15.19
Solyc01g112290.2.1	Tomato	plastid	71.07	15.09
GSMUA_Achr8P25460_001	Banana	mitochondrion	71.07	15.06
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0
Zm00001d003735_P001	Maize	cytosol	0.0	0.0
Zm00001d012985_P001	Maize	cytosol, extracellular	0.0	0.0

Protein Annotations

MapMan:17.2.7	Gene3D:3.40.50.620	MapMan:7.12.1.1	UniProt:A0A1D6QP66	ProteinID:AQK59363.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874
GO:GO:0019538	GO:GO:0043039	InterPro:Glu/Gln-tRNA-synth_Ib_cat-dom	InterPro:IPR014729	PFAM:PF00749	PANTHER:PTHR43311
PANTHER:PTHR43311:SF2	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52374	UniParc:UPI0008453129	EnsemblPlantsGene:Zm00001d053389	EnsemblPlants:Zm00001d053389_P001
EnsemblPlants:Zm00001d053389_T001	:	:	:	:	:

Description

Glutamate--tRNA ligase chloroplastic/mitochondrial

Coordinates

chr4:-:228946356..228947500

Molecular Weight (calculated)

13856.5 Da

IEP (calculated)

6.340

GRAVY (calculated)

-0.186

Length

121 amino acids

Sequence
(BLAST)

001: MGKWASASDA EVHQELEKGT SYTYRFHVPK EGSLKVNDLI RADSFIKVSW NLDTLGDFVI MRSNGQPVYN FCVTVDDATM QISHVIRAEE HLPNTLRQAL
101: IYKVIPSTFC YLVFHNLYPD T

Best Arabidopsis Sequence Match ( AT5G64050.1 )
(BLAST)

001: MASLVYGTPW LRVRSLPELA PAFLRRRQSS LFYCSRRSFA VVACSTPVNN GGSVRVRFAP SPTGNLHVGG ARTALFNYLF ARSKGGKFVL RIEDTDLERS
101: TRESEAAVLQ DLSWLGLDWD EGPGVSGDFG PYRQSERNAL YKQYAEKLLE SGHVYRCFCS SEELVKMKEN AKLKQLPPVY TGKWATASDA EIEQELEKGT
201: PFTYRFRVPK EGSLKINDLI RGEVCWNLDT LGDFVVMRSN GQPVYNFCVT VDDATMAISH VIRAEEHLPN TLRQALIYKA LKFPMPQFAH VSLILAPDRS
301: KLSKRHGATS VGQYREMGYL PQGMVNYLAL LGWGDGTENE FFTLEDLVEK FSIERVNKSG AIFDSTKLRW MNGQHLRALP NEKLTKLVGE RWKSAGILTE
401: SEGSFVNEAV ELLKDGIELV TDSDKVLLNL LSYPLHATLA SPEAKPAVED KLHEVAASLI AAYDSGEIPS ALEEGQGAWQ KWVKAFGKSL KRKGKSLFMP
501: LRVLLTGKLH GPEMGTSIVL IYKAGSPGIV VPQAGFVSME ERFKILREID WEALNKDESV PLESTATVST

Arabidopsis Description

OVA3Glutamate--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FEA2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.