Factsheet for Zm00001d053901_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06189	Sorghum	mitochondrion, plastid	91.78	93.87
Zm00001d015037_P002	Maize	mitochondrion, plastid	90.07	93.43
Os02t0121000-01	Rice	plastid	83.56	86.07
Zm00001d026115_P001	Maize	cytosol	27.23	85.95
Zm00001d053389_P001	Maize	cytosol	17.29	83.47
TraesCS6A01G070500.1	Wheat	plastid	78.94	82.47
TraesCS6B01G094500.1	Wheat	mitochondrion, plastid	78.42	81.79
TraesCS6D01G068300.1	Wheat	mitochondrion, plastid	78.25	81.75
HORVU6Hr1G012710.2	Barley	cytosol, plastid	78.25	79.76
GSMUA_Achr8P25460_001	Banana	mitochondrion	74.32	76.01
VIT_03s0038g04080.t01	Wine grape	plastid	71.75	74.03
CDX84484	Canola	plastid	71.4	73.67
CDY43784	Canola	plastid	70.55	72.79
AT5G64050.1	Thale cress	mitochondrion	70.89	72.63
KRH66310	Soybean	nucleus	69.35	72.45
KRH48974	Soybean	plastid	68.49	71.17
Solyc01g112290.2.1	Tomato	plastid	68.66	70.35
Bra024262.1-P	Field mustard	plastid	69.35	69.35
Zm00001d003735_P001	Maize	cytosol	4.97	65.91
GSMUA_Achr11P...	Banana	cytosol	6.16	61.02
Zm00001d012985_P001	Maize	cytosol, extracellular	5.31	55.36

Protein Annotations

KEGG:00860+6.1.1.17	KEGG:00970+6.1.1.17	Gene3D:1.10.10.350	MapMan:17.2.7	Gene3D:3.40.50.620	MapMan:7.12.1.1
UniProt:A0A1D6QTB4	ProteinID:AQK60681.1	GO:GO:0000049	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004812	GO:GO:0004818	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006424	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0016874	GO:GO:0019538	GO:GO:0043039	InterPro:Glu-tRNA-ligase_bac/mito	InterPro:Glu/Gln-tRNA-synth
InterPro:Glu/Gln-tRNA-synth_Ib_cat-dom	InterPro:GluRS_core	InterPro:IPR014729	InterPro:IPR020751	HAMAP:MF_00022	PFAM:PF00749
PRINTS:PR00987	ScanProsite:PS00178	PANTHER:PTHR43311	PANTHER:PTHR43311:SF2	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48163
SUPFAM:SSF52374	TIGRFAMs:TIGR00464	UniParc:UPI000844F1EA	EnsemblPlantsGene:Zm00001d053901	EnsemblPlants:Zm00001d053901_P001	EnsemblPlants:Zm00001d053901_T001
InterPro:aa-tRNA-synth_I_CS	InterPro:aa-tRNA-synth_I_codon-bd	InterPro:aa-tRNA-synth_I_codon-bd_sub2	SEG:seg	:	:

Description

Glutamate--tRNA ligase chloroplastic/mitochondrial

Coordinates

chr4:-:243354098..243358655

Molecular Weight (calculated)

64703.1 Da

IEP (calculated)

7.033

GRAVY (calculated)

-0.275

Length

584 amino acids

Sequence
(BLAST)

001: MAASALLTGS PWLRMRLLPD APARPFRRLH LCRALSARAS AATGGAEGNS GPVRVRFAPS PTGNLHVGGA RTALFNYLFA RSKGGRFVLR VEDTDLERST
101: RKSEEAVLAD LAWLGLEWDE GPDVGGEFGP YRQSERNSLY KKYAEKLLDS GAVYRCFCSN EELEQMKEVA KQRQLPPVYM GKWASASDAE VHQELEKGTP
201: YTYRFHVPKE GSLKINDLIR GEVISDSFIK VSWNLDTLGD FVIMRSNGQP VYNFCVTVDD ATMQISHVIR AEEHLPNTLR QALIYKALGF AMPSFAHVSL
301: ILAPDRSKLS KRHGATSVGQ YKEMGYLPQA MVNYLALLGW GDGTENEFFT IDDLAWCYFS FAVHKFTINR VNKSGAVFDA TKLKWMNGQH LRSFPHDELI
401: KAFEDRWKDT GILQESESSF AKEAAELLKD GIDLITDADA ALTNLLSYPL HTTLSSEEAK PVVQDKISEV ASSLISAYDS GELTQALAEG RDGWQKWVKG
501: FGKSIKRKGK GLFMPLRVLL TGKLHGPDIG GAIALIHKAG VCGAVTPQSN FVTLDERFRV LKEIDWDSLA KEQETPAESA VPAT

Best Arabidopsis Sequence Match ( AT5G64050.1 )
(BLAST)

001: MASLVYGTPW LRVRSLPELA PAFLRRRQSS LFYCSRRSFA VVACSTPVNN GGSVRVRFAP SPTGNLHVGG ARTALFNYLF ARSKGGKFVL RIEDTDLERS
101: TRESEAAVLQ DLSWLGLDWD EGPGVSGDFG PYRQSERNAL YKQYAEKLLE SGHVYRCFCS SEELVKMKEN AKLKQLPPVY TGKWATASDA EIEQELEKGT
201: PFTYRFRVPK EGSLKINDLI RGEVCWNLDT LGDFVVMRSN GQPVYNFCVT VDDATMAISH VIRAEEHLPN TLRQALIYKA LKFPMPQFAH VSLILAPDRS
301: KLSKRHGATS VGQYREMGYL PQGMVNYLAL LGWGDGTENE FFTLEDLVEK FSIERVNKSG AIFDSTKLRW MNGQHLRALP NEKLTKLVGE RWKSAGILTE
401: SEGSFVNEAV ELLKDGIELV TDSDKVLLNL LSYPLHATLA SPEAKPAVED KLHEVAASLI AAYDSGEIPS ALEEGQGAWQ KWVKAFGKSL KRKGKSLFMP
501: LRVLLTGKLH GPEMGTSIVL IYKAGSPGIV VPQAGFVSME ERFKILREID WEALNKDESV PLESTATVST

Arabidopsis Description

OVA3Glutamate--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FEA2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.