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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • cytosol 2
  • mitochondrion 5
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:mitochondrion
Plant-mPloc:cytosol, mitochondrion, plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
 mitochondrion: 19214577
plastid: 19214577
plastid: 17189339
gfp PMID: 19214577 doi
CV Morgante, RA Rodrigues, PA Marbach, CM Borgonovi, DS Moura, MC Silva-Filho
Departamento de Genética, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Av. Pádua Dias, 11, C.P. 83, Piracicaba, SP, 13400-970, Brazil.
msms PMID: 17189339 doi
T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d015037_P002 Maize mitochondrion, plastid 85.71 86.32
EES06189 Sorghum mitochondrion, plastid 86.77 86.16
TraesCS6A01G070500.1 Wheat plastid 83.77 84.97
TraesCS6B01G094500.1 Wheat mitochondrion, plastid 83.6 84.64
TraesCS6D01G068300.1 Wheat mitochondrion, plastid 83.42 84.62
Zm00001d053901_P001 Maize mitochondrion, plastid 86.07 83.56
HORVU6Hr1G012710.2 Barley cytosol, plastid 83.07 82.2
VIT_03s0038g04080.t01 Wine grape plastid 76.19 76.33
GSMUA_Achr8P25460_001 Banana mitochondrion 76.72 76.18
AT5G64050.1 Thale cress mitochondrion 74.78 74.39
CDX84484 Canola plastid 74.25 74.38
CDY43784 Canola plastid 74.07 74.2
KRH66310 Soybean nucleus 72.13 73.17
KRH48974 Soybean plastid 71.78 72.42
Solyc01g112290.2.1 Tomato plastid 71.6 71.23
Bra024262.1-P Field mustard plastid 72.31 70.21
GSMUA_Achr11P... Banana cytosol 6.7 64.41
Protein Annotations
KEGG:00860+6.1.1.17KEGG:00970+6.1.1.17Gene3D:1.10.10.350MapMan:17.2.7Gene3D:3.40.50.620EntrezGene:4328118
MapMan:7.12.1.1EMBL:AK099931ProteinID:BAD07597.1ProteinID:BAD08137.1ProteinID:BAF07628.1ProteinID:BAS76706.1
ProteinID:EEE56201.1GO:GO:0000049GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003824GO:GO:0004812GO:GO:0004818GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006139GO:GO:0006412GO:GO:0006418
GO:GO:0006424GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0009058GO:GO:0009987
GO:GO:0016874GO:GO:0019538GO:GO:0043039InterPro:Glu-tRNA-ligase_bac/mitoInterPro:Glu/Gln-tRNA-synthInterPro:Glu/Gln-tRNA-synth_Ib_cat-dom
InterPro:GluRS_coreInterPro:IPR014729InterPro:IPR020751HAMAP:MF_00022EnsemblPlantsGene:Os02g0121000EnsemblPlants:Os02t0121000-01
PFAM:PF00749PRINTS:PR00987ScanProsite:PS00178PANTHER:PTHR43311PANTHER:PTHR43311:SF2UniProt:Q6YUS0
InterPro:Rossmann-like_a/b/a_foldSUPFAM:SSF48163SUPFAM:SSF52374TIGRFAMs:TIGR00464UniParc:UPI0000236743RefSeq:XP_015622843.1
InterPro:aa-tRNA-synth_I_CSInterPro:aa-tRNA-synth_I_codon-bdInterPro:aa-tRNA-synth_I_codon-bd_sub2SEG:seg::
Description
Similar to Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase) (GluRS). (Os02t0121000-01)
Coordinates
chr2:-:1090428..1095969
Molecular Weight (calculated)
62867.2 Da
IEP (calculated)
6.687
GRAVY (calculated)
-0.304
Length
567 amino acids
Sequence
(BLAST)
001: MMAAAMGSPW LRIRLLPEVP PRLLRPHLRR TLSVRASASA SASPDGAGGP VRVRFAPSPT GNLHVGGART ALFNYLFARS KGGKFVLRIE DTDLERSTKK
101: SEEAVLSDLA WLGLDWDEGP DVGGEFGPYR QSERNSMYKQ YAEKLMESGA VYQCFCSSEE LEQMKETAKQ MQLPPVYMGK WGTASDAEIQ QELEKGTPYT
201: YRFRVPKEGS LKINDLIRGE VSWNLDTLGD FVIMRSNGQP VYNFCVTVDD ATMRISHVIR AEEHLPNTLR QALIYKALGF PMPSFAHVSL ILAPDRSKLS
301: KRHGATSVGQ YKEMGYLPQA MVNYLALLGW GDGTENEFFT IDDLVEKFTI NRVNKSGAVF DAVKLKWMNG QHLRSFPPDV LIKSFEDRWK DTGILQESES
401: GFAKEAAELL KDGIDLITDA DAALSNLLSY PLHATLSSDE AKSVVQDKLS EVASGLISAY DSGELCQALA EGRDGWQKWV KIFGKSLKRK GKSLFMPLRV
501: LLTGKLHGPD MGGTVVLIHK AGTCGAVTQQ SGFVNLDERF RILKEVEWES LVQEQESPAE TAVPASR
Best Arabidopsis Sequence Match ( AT5G64050.1 )
(BLAST)
001: MASLVYGTPW LRVRSLPELA PAFLRRRQSS LFYCSRRSFA VVACSTPVNN GGSVRVRFAP SPTGNLHVGG ARTALFNYLF ARSKGGKFVL RIEDTDLERS
101: TRESEAAVLQ DLSWLGLDWD EGPGVSGDFG PYRQSERNAL YKQYAEKLLE SGHVYRCFCS SEELVKMKEN AKLKQLPPVY TGKWATASDA EIEQELEKGT
201: PFTYRFRVPK EGSLKINDLI RGEVCWNLDT LGDFVVMRSN GQPVYNFCVT VDDATMAISH VIRAEEHLPN TLRQALIYKA LKFPMPQFAH VSLILAPDRS
301: KLSKRHGATS VGQYREMGYL PQGMVNYLAL LGWGDGTENE FFTLEDLVEK FSIERVNKSG AIFDSTKLRW MNGQHLRALP NEKLTKLVGE RWKSAGILTE
401: SEGSFVNEAV ELLKDGIELV TDSDKVLLNL LSYPLHATLA SPEAKPAVED KLHEVAASLI AAYDSGEIPS ALEEGQGAWQ KWVKAFGKSL KRKGKSLFMP
501: LRVLLTGKLH GPEMGTSIVL IYKAGSPGIV VPQAGFVSME ERFKILREID WEALNKDESV PLESTATVST
Arabidopsis Description
OVA3Glutamate--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FEA2]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.