Factsheet for VIT_06s0004g01910.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G08580.2	Thale cress	mitochondrion, plastid	83.21	85.83
KRH43521	Soybean	cytosol, mitochondrion, plastid	84.73	85.82
KRH20834	Soybean	mitochondrion	80.41	85.64
KRH13934	Soybean	mitochondrion	84.48	85.35
AT5G13490.1	Thale cress	cytosol, mitochondrion, plastid	81.93	83.64
Bra006203.1-P	Field mustard	plastid	79.9	83.29
CDX70507	Canola	plastid	79.9	83.29
CDX78525	Canola	plastid	79.9	83.29
CDX91117	Canola	plastid	80.41	82.94
CDX69638	Canola	mitochondrion, plastid	78.37	82.8
CDY09801	Canola	plastid	79.9	82.63
Bra008826.1-P	Field mustard	mitochondrion, plastid	77.61	81.77
VIT_19s0177g00370.t01	Wine grape	cytosol, mitochondrion	29.52	81.69
TraesCS6A01G282200.1	Wheat	plastid	78.12	80.79
Os02t0718900-01	Rice	mitochondrion	78.37	80.63
HORVU6Hr1G070780.1	Barley	plastid	77.86	80.53
TraesCS6D01G262700.1	Wheat	golgi, nucleus, unclear	77.86	80.53
VIT_12s0028g03380.t01	Wine grape	plastid	77.35	79.37
KXG30875	Sorghum	plastid	77.86	79.07
Zm00001d051685_P002	Maize	plastid	77.86	79.07
TraesCS6B01G310600.1	Wheat	plastid	78.12	78.52
Zm00001d017857_P002	Maize	plastid	77.1	77.89
VIT_13s0064g01050.t01	Wine grape	cytosol	85.5	70.44
VIT_17s0000g04970.t01	Wine grape	mitochondrion	45.8	58.06
CDX85645	Canola	plastid	80.41	45.4
VIT_10s0116g01120.t01	Wine grape	plastid	15.78	42.18
VIT_04s0008g01130.t01	Wine grape	cytosol	31.55	38.39
VIT_00s1209g00010.t01	Wine grape	cytosol, plastid	14.25	36.6
VIT_03s0038g00080.t01	Wine grape	plastid	16.29	34.59
VIT_16s0039g00600.t01	Wine grape	cytosol	19.34	30.52

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100260298	wikigene:100260298	MapMan:24.2.13	InterPro:Aden_trnslctor	ProteinID:CCB43719
ProteinID:CCB43719.1	UniProt:F6GU55	EMBL:FN594951	GO:GO:0003674	GO:GO:0005215	GO:GO:0005471
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015866	GO:GO:0015867	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0022857	GO:GO:0046902	GO:GO:0055085	InterPro:IPR018108
InterPro:IPR023395	EntrezGene:LOC100260298	wikigene:LOC100260298	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf
PFAM:PF00153	PRINTS:PR00926	PRINTS:PR00927	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF645
SUPFAM:SSF103506	TIGR:TC52169	TIGR:TC53239	TMHMM:TMhelix	UniParc:UPI000198367E	ArrayExpress:VIT_06s0004g01910
EnsemblPlantsGene:VIT_06s0004g01910	EnsemblPlants:VIT_06s0004g01910.t01	unigene:Vvi.1260	RefSeq:XP_002285503	RefSeq:XP_002285503.1	SEG:seg

Description

No Description!

Coordinates

chr6:+:2356104..2360405

Molecular Weight (calculated)

42840.5 Da

IEP (calculated)

10.245

GRAVY (calculated)

-0.098

Length

393 amino acids

Sequence
(BLAST)

001: MAERHQHPNI MRKVAGQLHL SSSISQDVHT HYGSFQSPAL YQRRSAFGNY SNVVLQYPMT QSCQATQDLS LIASTASPVF VQAPQEKGFA SFAVDFLMGG
101: VSAAVSKTAA APIERVKLLI QNQDEMIKAG RLSEPYKGIG DCFSRTIKDE GFASLWRGNT ANVIRYFPTQ ALNFAFKDYF KRLFNFKKDR DGYWKWFAGN
201: LASGGAAGAS SLLFVYSLDY ARTRLANDAK AAKKGGGDRQ FNGLVDVYRK TLKSDGIAGL YRGFNISCVG IIVYRGLYFG MYDSLKPVIL TGKLQDSFFA
301: SFALGWVITN GAGLASYPID TVRRRMMMTS GEAVKYKSSL DAFNQILKNE GAKSLFKGAG ANILRAVAGA GVLAGYDKLQ VLVLGKKYGS GGA

Best Arabidopsis Sequence Match ( AT5G13490.1 )
(BLAST)

001: MVEQTQHPTI LQKVSGQLLS SSVSQDIRGY ASASKRPATY QKHAAYGNYS NAAFQYPLVA ASQIATTTSP VFVQAPGEKG FTNFAIDFMM GGVSAAVSKT
101: AAAPIERVKL LIQNQDEMLK AGRLTEPYKG IRDCFGRTIR DEGIGSLWRG NTANVIRYFP TQALNFAFKD YFKRLFNFKK DKDGYWKWFA GNLASGGAAG
201: ASSLLFVYSL DYARTRLAND SKSAKKGGGE RQFNGLVDVY KKTLKSDGIA GLYRGFNISC AGIIVYRGLY FGLYDSVKPV LLTGDLQDSF FASFALGWLI
301: TNGAGLASYP IDTVRRRMMM TSGEAVKYKS SFDAFSQIVK KEGAKSLFKG AGANILRAVA GAGVLAGYDK LQLIVFGKKY GSGGA

Arabidopsis Description

AAC2AAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF67]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.