Factsheet for TraesCS6D01G262700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, nucleus

Predictor Summary:

plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G282200.1	Wheat	plastid	99.47	99.47
HORVU6Hr1G070780.1	Barley	plastid	98.16	98.16
TraesCS6B01G310600.1	Wheat	plastid	99.21	96.42
GSMUA_Achr1P19560_001	Banana	cytosol	6.58	96.15
Os02t0718900-01	Rice	mitochondrion	93.16	92.67
GSMUA_Achr8P25670_001	Banana	cytosol, mitochondrion, plastid	64.21	91.39
KXG30875	Sorghum	plastid	90.53	88.89
Zm00001d051685_P002	Maize	plastid	89.74	88.11
Zm00001d017857_P002	Maize	plastid	89.74	87.66
GSMUA_Achr3P11040_001	Banana	mitochondrion	80.53	83.84
Solyc01g087070.2.1	Tomato	unclear	74.47	81.79
GSMUA_Achr9P19840_001	Banana	mitochondrion	24.21	81.42
AT3G08580.2	Thale cress	mitochondrion, plastid	80.26	80.05
GSMUA_Achr3P11890_001	Banana	cytosol, mitochondrion, plastid	82.11	79.8
CDX70507	Canola	plastid	77.63	78.25
VIT_19s0177g00370.t01	Wine grape	cytosol, mitochondrion	29.21	78.17
KRH20834	Soybean	mitochondrion	75.79	78.05
CDX78525	Canola	plastid	77.37	77.98
Bra006203.1-P	Field mustard	plastid	77.37	77.98
VIT_06s0004g01910.t01	Wine grape	cytosol, mitochondrion, plastid	80.53	77.86
KRH13934	Soybean	mitochondrion	79.21	77.38
KRH43521	Soybean	cytosol, mitochondrion, plastid	78.95	77.32
CDX91117	Canola	plastid	77.37	77.17
CDX69638	Canola	mitochondrion, plastid	75.53	77.15
AT5G13490.1	Thale cress	cytosol, mitochondrion, plastid	77.89	76.88
CDY09801	Canola	plastid	76.84	76.84
PGSC0003DMT400017550	Potato	cytosol, mitochondrion, plastid	76.05	76.45
Bra008826.1-P	Field mustard	mitochondrion, plastid	74.47	75.87
GSMUA_Achr10P...	Banana	unclear	83.42	70.29
TraesCS7D01G211700.2	Wheat	mitochondrion, plastid	69.47	69.47
GSMUA_Achr9P02190_001	Banana	golgi, mitochondrion, plastid	24.74	64.38
VIT_13s0064g01050.t01	Wine grape	cytosol	78.42	62.47
GSMUA_Achr1P19540_001	Banana	extracellular	13.42	55.43
TraesCS3D01G030800.1	Wheat	mitochondrion	47.89	54.49
CDX85645	Canola	plastid	77.37	42.24
TraesCS1D01G364800.1	Wheat	peroxisome	31.05	36.09

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	InterPro:Aden_trnslctor	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0022857	GO:GO:0055085	InterPro:IPR018108	InterPro:IPR023395
InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926	PRINTS:PR00927
PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF645	SUPFAM:SSF103506	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G262700
EnsemblPlants:TraesCS6D01G262700.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:371294595..371296222

Molecular Weight (calculated)

41414.9 Da

IEP (calculated)

10.301

GRAVY (calculated)

-0.107

Length

380 amino acids

Sequence
(BLAST)

001: MADRANHPSV MQKFGGQFHL ASSFSEGVRA RNICPSVPSY ERRFTTSSYM TQNLGISVPM MSSSPLFANA PPEKKGVKNF AIDFLMGGVS AAVSKTAAAP
101: IERVKLLIQN QDEMIKAGRL SEPYKGIGDC FGRTIKDEGF GSLWRGNTAN VIRYFPTQAL NFAFKDYFKR MFNFKKDKDG YWKWFGGNLA SGGAAGASSL
201: FFVYSLDYAR TRLANDAKAS KGGGERQFNG LVDVYRKTLK SDGIAGLYRG FNISCVGIIV YRGLYFGLYD SLKPVLLTGT LQDNFFASFA LGWLITNGAG
301: LASYPIDTVR RRMMMTSGEA VKYKSSLDAF QQILAKEGAK SLFKGAGANI LRAIAGAGVL SGYDQLQILF FGKKYGSGGA

Best Arabidopsis Sequence Match ( AT5G13490.1 )
(BLAST)

001: MVEQTQHPTI LQKVSGQLLS SSVSQDIRGY ASASKRPATY QKHAAYGNYS NAAFQYPLVA ASQIATTTSP VFVQAPGEKG FTNFAIDFMM GGVSAAVSKT
101: AAAPIERVKL LIQNQDEMLK AGRLTEPYKG IRDCFGRTIR DEGIGSLWRG NTANVIRYFP TQALNFAFKD YFKRLFNFKK DKDGYWKWFA GNLASGGAAG
201: ASSLLFVYSL DYARTRLAND SKSAKKGGGE RQFNGLVDVY KKTLKSDGIA GLYRGFNISC AGIIVYRGLY FGLYDSVKPV LLTGDLQDSF FASFALGWLI
301: TNGAGLASYP IDTVRRRMMM TSGEAVKYKS SFDAFSQIVK KEGAKSLFKG AGANILRAVA GAGVLAGYDK LQLIVFGKKY GSGGA

Arabidopsis Description

AAC2AAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF67]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.