Factsheet for Solyc01g087070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P19560_001	Banana	cytosol	7.23	96.15
PGSC0003DMT400017550	Potato	cytosol, mitochondrion, plastid	98.84	90.48
GSMUA_Achr8P25670_001	Banana	cytosol, mitochondrion, plastid	68.79	89.14
GSMUA_Achr9P19840_001	Banana	mitochondrion	27.75	84.96
KRH20834	Soybean	mitochondrion	84.1	78.86
CDX69638	Canola	mitochondrion, plastid	83.81	77.96
GSMUA_Achr3P11040_001	Banana	mitochondrion	81.5	77.26
Solyc11g062190.1.1	Tomato	nucleus	84.97	76.76
Bra008826.1-P	Field mustard	mitochondrion, plastid	82.66	76.68
CDX70507	Canola	plastid	83.24	76.39
CDY09801	Canola	plastid	83.81	76.32
CDX78525	Canola	plastid	82.95	76.13
AT3G08580.2	Thale cress	mitochondrion, plastid	83.81	76.12
CDX91117	Canola	plastid	83.81	76.12
KRH43521	Soybean	cytosol, mitochondrion, plastid	85.26	76.03
Solyc11g062130.1.1	Tomato	plastid	84.68	75.91
Bra006203.1-P	Field mustard	plastid	82.66	75.86
Os02t0718900-01	Rice	mitochondrion	83.53	75.65
KRH13934	Soybean	mitochondrion	84.68	75.32
TraesCS6A01G282200.1	Wheat	plastid	81.79	74.47
TraesCS6D01G262700.1	Wheat	golgi, nucleus, unclear	81.79	74.47
HORVU6Hr1G070780.1	Barley	plastid	81.79	74.47
Zm00001d051685_P002	Maize	plastid	83.24	74.42
GSMUA_Achr3P11890_001	Banana	cytosol, mitochondrion, plastid	83.53	73.91
AT5G13490.1	Thale cress	cytosol, mitochondrion, plastid	82.08	73.77
KXG30875	Sorghum	plastid	82.37	73.64
Zm00001d017857_P002	Maize	plastid	82.08	73.01
TraesCS6B01G310600.1	Wheat	plastid	82.08	72.63
Solyc07g053830.2.1	Tomato	plastid	78.61	71.02
GSMUA_Achr9P02190_001	Banana	golgi, mitochondrion, plastid	27.17	64.38
GSMUA_Achr10P...	Banana	unclear	83.81	64.3
GSMUA_Achr1P19540_001	Banana	extracellular	16.76	63.04
Solyc01g014210.1.1	Tomato	plastid	52.89	61.62
Solyc06g069410.2.1	Tomato	cytosol, mitochondrion, plastid	52.89	58.47
CDX85645	Canola	plastid	83.81	41.67
Solyc08g063010.2.1	Tomato	endoplasmic reticulum, vacuole	23.41	26.38
Solyc08g063030.2.1	Tomato	cytosol	16.76	23.29

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	InterPro:Aden_trnslctor	GO:GO:0003674	GO:GO:0005215	GO:GO:0005471
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015866	GO:GO:0015867	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0022857	GO:GO:0046902	GO:GO:0055085	InterPro:IPR018108
InterPro:IPR023395	UniProt:K4AYA0	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153
PRINTS:PR00926	PRINTS:PR00927	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF654	SUPFAM:SSF103506
EnsemblPlantsGene:Solyc01g087070.2	EnsemblPlants:Solyc01g087070.2.1	TMHMM:TMhelix	UniParc:UPI0002762F90	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:82011334..82013343

Molecular Weight (calculated)

37773.6 Da

IEP (calculated)

10.209

GRAVY (calculated)

-0.063

Length

346 amino acids

Sequence
(BLAST)

001: MAYQRQYKYG SQTKPWLHRC EGMPVVSSYS SPVFVQAPSE KGFTSFAIDF LMGGVSAAVS KTAAAPIERV KLLIQNQDEM IKAGRLSKPY GGIAECFSRT
101: MKEEGVMSLW RGNTANVIRY FPTQALNFAF KDYFKRLFNF KKDRDGYWKW FAGNLASGGA AGASSLFFVY SLDYARTRLA NDAKAAKGGG DRQFNGMVDV
201: YKKTLASDGV AGLYRGFNIS CVGIIVYRGL YFGLYDSLKP VVLTGSLQDS FFASFALGWL ITNGAGLASY PIDTVRRRMM MTSGEAVKYK SSMDAFTQIL
301: KNEGPKSLFK GAGANILRAI AGAGVLSGYD KLQLLVLGKK YGSGGA

Best Arabidopsis Sequence Match ( AT5G13490.1 )
(BLAST)

001: MVEQTQHPTI LQKVSGQLLS SSVSQDIRGY ASASKRPATY QKHAAYGNYS NAAFQYPLVA ASQIATTTSP VFVQAPGEKG FTNFAIDFMM GGVSAAVSKT
101: AAAPIERVKL LIQNQDEMLK AGRLTEPYKG IRDCFGRTIR DEGIGSLWRG NTANVIRYFP TQALNFAFKD YFKRLFNFKK DKDGYWKWFA GNLASGGAAG
201: ASSLLFVYSL DYARTRLAND SKSAKKGGGE RQFNGLVDVY KKTLKSDGIA GLYRGFNISC AGIIVYRGLY FGLYDSVKPV LLTGDLQDSF FASFALGWLI
301: TNGAGLASYP IDTVRRRMMM TSGEAVKYKS SFDAFSQIVK KEGAKSLFKG AGANILRAVA GAGVLAGYDK LQLIVFGKKY GSGGA

Arabidopsis Description

AAC2AAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF67]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.