CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
extracellular: 25724908
endoplasmic reticulum: 27224218
mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43521	Soybean	cytosol, mitochondrion, plastid	96.66	96.91
GSMUA_Achr1P19560_001	Banana	cytosol	6.43	96.15
GSMUA_Achr8P25670_001	Banana	cytosol, mitochondrion, plastid	64.01	93.26
KRH20834	Soybean	mitochondrion	86.38	91.06
AT3G08580.2	Thale cress	mitochondrion, plastid	83.8	85.56
Solyc01g087070.2.1	Tomato	unclear	75.32	84.68
VIT_06s0004g01910.t01	Wine grape	cytosol, mitochondrion, plastid	85.35	84.48
GSMUA_Achr9P19840_001	Banana	mitochondrion	24.42	84.07
GSMUA_Achr3P11040_001	Banana	mitochondrion	78.66	83.84
AT5G13490.1	Thale cress	cytosol, mitochondrion, plastid	82.01	82.86
GSMUA_Achr3P11890_001	Banana	cytosol, mitochondrion, plastid	83.03	82.61
KRH25624	Soybean	endoplasmic reticulum	78.66	82.48
KRH55930	Soybean	mitochondrion	78.66	82.26
KRH22368	Soybean	mitochondrion	76.86	81.47
KRH26962	Soybean	mitochondrion	76.86	81.47
CDX70507	Canola	plastid	78.92	81.43
CDX69638	Canola	mitochondrion, plastid	77.64	81.18
CDY09801	Canola	plastid	79.18	81.05
VIT_19s0177g00370.t01	Wine grape	cytosol, mitochondrion	29.56	80.99
Bra006203.1-P	Field mustard	plastid	78.41	80.9
CDX78525	Canola	plastid	78.41	80.9
CDX91117	Canola	plastid	78.92	80.58
PGSC0003DMT400017550	Potato	cytosol, mitochondrion, plastid	77.64	79.89
Os02t0718900-01	Rice	mitochondrion	78.41	79.84
Bra008826.1-P	Field mustard	mitochondrion, plastid	76.35	79.62
Zm00001d051685_P002	Maize	plastid	78.92	79.33
KXG30875	Sorghum	plastid	78.92	79.33
TraesCS6D01G262700.1	Wheat	golgi, nucleus, unclear	77.38	79.21
HORVU6Hr1G070780.1	Barley	plastid	77.12	78.95
TraesCS6A01G282200.1	Wheat	plastid	77.12	78.95
Zm00001d017857_P002	Maize	plastid	78.92	78.92
TraesCS6B01G310600.1	Wheat	plastid	77.64	77.24
KRH23142	Soybean	cytosol, mitochondrion, plastid	78.41	77.22
KRH20836	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	43.96	75.66
GSMUA_Achr10P...	Banana	unclear	82.01	70.73
VIT_13s0064g01050.t01	Wine grape	cytosol	84.32	68.76
GSMUA_Achr9P02190_001	Banana	golgi, mitochondrion, plastid	24.68	65.75
GSMUA_Achr1P19540_001	Banana	extracellular	14.14	59.78
KRH41838	Soybean	cytosol	45.76	56.69
KRH60537	Soybean	cytosol	45.5	56.37
CDX85645	Canola	plastid	79.43	44.4
KRH61511	Soybean	cytosol	30.08	37.03
KRH52203	Soybean	cytosol, mitochondrion, peroxisome	30.08	36.45
KRH04954	Soybean	cytosol	10.28	34.78

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100789942	MapMan:24.2.13	EMBL:ACUP02009800	InterPro:Aden_trnslctor	EnsemblPlantsGene:GLYMA_15G273600
GO:GO:0003674	GO:GO:0005215	GO:GO:0005471	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0015866	GO:GO:0015867	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0022857
GO:GO:0046902	GO:GO:0055085	UniProt:I1MJN2	InterPro:IPR018108	InterPro:IPR023395	ProteinID:KRH13933.1
EnsemblPlants:KRH13934	ProteinID:KRH13934	ProteinID:KRH13934.1	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf
PFAM:PF00153	PRINTS:PR00926	PRINTS:PR00927	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF654
SUPFAM:SSF103506	TMHMM:TMhelix	UniParc:UPI000233BFE9	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:+:51130117..51134021

Molecular Weight (calculated)

42100.8 Da

IEP (calculated)

10.160

GRAVY (calculated)

-0.022

Length

389 amino acids

Sequence
(BLAST)

001: MVDQVQHPTI MDKVAGQLHL RSGLSSGIRS YDGAYRHPAM YQRPSFGNYS NAALQFPVMP TCKATMDLSA TATSASPVFV AAPAEKGHFL LDFLMGGVSA
101: AVSKTAAAPI ERVKLLIQNQ DEMIKTGRLS EPYKGIGDCF KRTMADEGAI SLWRGNTANV IRYFPTQALN FAFKDYFKRL FNFKKDRDGY WKWFAGNLAS
201: GGAAGASSLL FVYSLDYART RLANDAKAAK KGGERQFNGL VDVYRKTLAS DGVAGLYRGF NISCVGIIVY RGLYFGLYDS VKPVVLTGSL QDSFFASFAL
301: GWLITNGAGL ASYPIDTVRR RMMMTSGEAV KYKSSLDAFT QILKNEGAKS LFKGAGANIL RAVAGAGVLA GYDKLQVLVF GKKYGSGGA

Best Arabidopsis Sequence Match ( AT5G13490.1 )
(BLAST)

001: MVEQTQHPTI LQKVSGQLLS SSVSQDIRGY ASASKRPATY QKHAAYGNYS NAAFQYPLVA ASQIATTTSP VFVQAPGEKG FTNFAIDFMM GGVSAAVSKT
101: AAAPIERVKL LIQNQDEMLK AGRLTEPYKG IRDCFGRTIR DEGIGSLWRG NTANVIRYFP TQALNFAFKD YFKRLFNFKK DKDGYWKWFA GNLASGGAAG
201: ASSLLFVYSL DYARTRLAND SKSAKKGGGE RQFNGLVDVY KKTLKSDGIA GLYRGFNISC AGIIVYRGLY FGLYDSVKPV LLTGDLQDSF FASFALGWLI
301: TNGAGLASYP IDTVRRRMMM TSGEAVKYKS SFDAFSQIVK KEGAKSLFKG AGANILRAVA GAGVLAGYDK LQLIVFGKKY GSGGA

Arabidopsis Description

AAC2AAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF67]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.