CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78525	Canola	plastid	99.2	99.2
Bra006203.1-P	Field mustard	plastid	98.67	98.67
CDX91117	Canola	plastid	97.61	96.59
CDY09801	Canola	plastid	97.35	96.58
GSMUA_Achr1P19560_001	Banana	cytosol	6.63	96.15
CDX69638	Canola	mitochondrion, plastid	94.69	95.97
GSMUA_Achr8P25670_001	Banana	cytosol, mitochondrion, plastid	63.4	89.51
AT5G13490.1	Thale cress	cytosol, mitochondrion, plastid	88.86	87.01
Solyc01g087070.2.1	Tomato	unclear	76.39	83.24
KRH20834	Soybean	mitochondrion	79.84	81.57
GSMUA_Achr3P11040_001	Banana	mitochondrion	78.51	81.1
GSMUA_Achr9P19840_001	Banana	mitochondrion	24.14	80.53
VIT_06s0004g01910.t01	Wine grape	cytosol, mitochondrion, plastid	83.29	79.9
KRH43521	Soybean	cytosol, mitochondrion, plastid	81.43	79.12
KRH13934	Soybean	mitochondrion	81.43	78.92
PGSC0003DMT400017550	Potato	cytosol, mitochondrion, plastid	78.51	78.31
Os02t0718900-01	Rice	mitochondrion	79.05	78.01
TraesCS6D01G262700.1	Wheat	golgi, nucleus, unclear	78.25	77.63
VIT_19s0177g00370.t01	Wine grape	cytosol, mitochondrion	29.18	77.46
TraesCS6A01G282200.1	Wheat	plastid	77.98	77.37
HORVU6Hr1G070780.1	Barley	plastid	77.72	77.11
GSMUA_Achr3P11890_001	Banana	cytosol, mitochondrion, plastid	79.58	76.73
KXG30875	Sorghum	plastid	78.51	76.49
Zm00001d051685_P002	Maize	plastid	77.98	75.97
CDY14242	Canola	plastid	75.86	75.86
Zm00001d017857_P002	Maize	plastid	78.25	75.84
TraesCS6B01G310600.1	Wheat	plastid	78.51	75.7
CDX97439	Canola	plastid	75.6	75.6
GSMUA_Achr10P...	Banana	unclear	80.11	66.96
VIT_13s0064g01050.t01	Wine grape	cytosol	81.7	64.57
GSMUA_Achr9P02190_001	Banana	golgi, mitochondrion, plastid	24.4	63.01
CDY02706	Canola	cytosol, mitochondrion, plastid	46.95	57.65
CDX85456	Canola	cytosol, mitochondrion, plastid	45.89	56.35
GSMUA_Achr1P19540_001	Banana	extracellular	13.53	55.43
CDX85645	Canola	plastid	97.61	52.87
CDY01045	Canola	golgi, mitochondrion, plastid	20.42	52.74
CDY58293	Canola	cytosol	38.73	52.52
CDX76233	Canola	mitochondrion, plastid	30.5	52.04
CDY38426	Canola	cytosol	46.68	48.48
CDY16928	Canola	mitochondrion, plastid	46.68	46.81
CDY42596	Canola	peroxisome	19.63	42.29
CDY01046	Canola	plastid	9.81	38.54
CDY20722	Canola	mitochondrion	13.26	32.26
CDY47751	Canola	nucleus, plastid	20.95	31.85
CDY32779	Canola	cytosol, mitochondrion, nucleus	5.31	31.75
CDY32780	Canola	cytosol	9.55	26.09

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	GO:A0A078C170	InterPro:Aden_trnslctor	EnsemblPlants:CDX70507	ProteinID:CDX70507
ProteinID:CDX70507.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00140336001	InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_carrier
InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926	PRINTS:PR00927	PFscan:PS50920
PANTHER:PTHR24089	PANTHER:PTHR24089:SF645	SUPFAM:SSF103506	TMHMM:TMhelix	UniParc:UPI0004EDDD62	SEG:seg

Description

BnaC03g05910D

Coordinates

chrLK031791:+:781954..784121

Molecular Weight (calculated)

41050.3 Da

IEP (calculated)

10.270

GRAVY (calculated)

-0.137

Length

377 amino acids

Sequence
(BLAST)

001: MVEQTQQPTI FQKASGQILR SGVSQDIHGY TSGFQRRATY GNYSNAAFQY PLAATSRIVT TTSPVFVQAP GEKGFSSFAI DFLMGGVSAA VSKTAAAPIE
101: RVKLLIQNQD EMLKAGRLSE PYKGIGDCFG RTIKDEGFGS LWRGNTANVI RYFPTQALNF AFKDYFKRLF NFKKDKDGYW KWFAGNLGSG GAAGASSLLF
201: VYSLDYARTR LANDSKAAKK GGERQFNGLV DVYKKTLKSD GIAGLYRGFN ISCVGIIVYR GLYFGLYDSL KPLLPADLQD SFFASFALGW LITNGAGLAS
301: YPIDTVRRRM MMTSGEAVKY KSSMDAFQQI LKKEGPKSLF KGAGANILRA IAGAGVLSGY DKLQLLLLGK KYGSGSG

Best Arabidopsis Sequence Match ( AT5G13490.1 )
(BLAST)

001: MVEQTQHPTI LQKVSGQLLS SSVSQDIRGY ASASKRPATY QKHAAYGNYS NAAFQYPLVA ASQIATTTSP VFVQAPGEKG FTNFAIDFMM GGVSAAVSKT
101: AAAPIERVKL LIQNQDEMLK AGRLTEPYKG IRDCFGRTIR DEGIGSLWRG NTANVIRYFP TQALNFAFKD YFKRLFNFKK DKDGYWKWFA GNLASGGAAG
201: ASSLLFVYSL DYARTRLAND SKSAKKGGGE RQFNGLVDVY KKTLKSDGIA GLYRGFNISC AGIIVYRGLY FGLYDSVKPV LLTGDLQDSF FASFALGWLI
301: TNGAGLASYP IDTVRRRMMM TSGEAVKYKS SFDAFSQIVK KEGAKSLFKG AGANILRAVA GAGVLAGYDK LQLIVFGKKY GSGGA

Arabidopsis Description

AAC2AAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF67]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.