CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid

Predictor Summary:

nucleus 1
mitochondrion 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plastid
Any Predictor:	golgi, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58293	Canola	cytosol	84.93	44.6
CDY02706	Canola	cytosol, mitochondrion, plastid	86.99	41.37
AT5G17400.1	Thale cress	cytosol	85.62	40.85
CDX85456	Canola	cytosol, mitochondrion, plastid	84.93	40.39
Zm00001d016230_P001	Maize	cytosol	63.01	36.8
CDX76233	Canola	mitochondrion, plastid	53.42	35.29
CDY38426	Canola	cytosol	87.67	35.26
GSMUA_AchrUn_...	Banana	cytosol	69.86	34.46
CDY16928	Canola	mitochondrion, plastid	88.36	34.31
VIT_17s0000g04970.t01	Wine grape	mitochondrion	71.23	33.55
KRH41838	Soybean	cytosol	71.23	33.12
Solyc06g069410.2.1	Tomato	cytosol, mitochondrion, plastid	69.86	32.59
PGSC0003DMT400010402	Potato	cytosol, mitochondrion, plastid	69.86	32.59
GSMUA_Achr6P35660_001	Banana	cytosol	66.44	32.23
KRH60537	Soybean	cytosol	69.18	32.17
TraesCS3B01G033100.1	Wheat	cytosol	65.75	28.66
TraesCS3B01G050500.1	Wheat	mitochondrion	65.07	28.44
TraesCS3D01G030800.1	Wheat	mitochondrion	65.07	28.44
TraesCS3A01G048500.1	Wheat	cytosol, plastid	65.07	28.27
EES04810	Sorghum	cytosol, mitochondrion, plastid	63.7	28.27
Os11t0661300-01	Rice	mitochondrion	63.01	27.96
CDY32779	Canola	cytosol, mitochondrion, nucleus	10.27	23.81
HORVU3Hr1G004820.22	Barley	mitochondrion	65.75	23.41
CDY14242	Canola	plastid	56.85	22.02
CDX97439	Canola	plastid	56.85	22.02
CDX69638	Canola	mitochondrion, plastid	52.74	20.7
CDY20722	Canola	mitochondrion	21.92	20.65
CDX78525	Canola	plastid	52.74	20.42
CDX70507	Canola	plastid	52.74	20.42
CDY09801	Canola	plastid	52.74	20.26
CDX91117	Canola	plastid	52.74	20.21
CDY47751	Canola	nucleus, plastid	30.82	18.15
CDX85645	Canola	plastid	52.74	11.06
CDY42596	Canola	peroxisome	11.64	9.71
CDY01046	Canola	plastid	2.74	4.17
CDY32780	Canola	cytosol	2.05	2.17

Protein Annotations

EnsemblPlants:CDY01045	EnsemblPlantsGene:GSBRNA2T00111081001	Gene3D:1.50.40.10	GO:A0A078EG64	GO:GO:0006810	GO:GO:0008150
GO:GO:0055085	InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf
PANTHER:PTHR24089	PANTHER:PTHR24089:SF472	PFAM:PF00153	PFscan:PS50920	PRINTS:PR00926	ProteinID:CDY01045
ProteinID:CDY01045.1	SUPFAM:SSF103506	TMHMM:TMhelix	UniParc:UPI0004EEE9CC	MapMan:24.2.13	:

Description

BnaC05g41550D

Coordinates

chrLK031923:-:879321..879834

Molecular Weight (calculated)

16392.3 Da

IEP (calculated)

10.022

GRAVY (calculated)

0.368

Length

146 amino acids

Sequence
(BLAST)

001: MVDVYRKTLS SDGVKGFYRG FGVSILGITL YRGMYFGMYD TIKPIVLAVS LEGNFLASFL LGWSITTFVG VIAYPFDTVR RRMMLTSGQP VKYMNVIHAL
101: REIMKYEGFS ALYKGVTANV LLSVAGAGVL TGYDHLHRIA YKHWLQ

Best Arabidopsis Sequence Match ( AT3G08580.1 )
(BLAST)

001: MVDQVQHPTI AQKAAGQFMR SSVSKDVQVG YQRPSMYQRH ATYGNYSNAA FQFPPTSRML ATTASPVFVQ TPGEKGFTNF ALDFLMGGVS AAVSKTAAAP
101: IERVKLLIQN QDEMIKAGRL SEPYKGIGDC FGRTIKDEGF GSLWRGNTAN VIRYFPTQAL NFAFKDYFKR LFNFKKDRDG YWKWFAGNLA SGGAAGASSL
201: LFVYSLDYAR TRLANDAKAA KKGGGGRQFD GLVDVYRKTL KTDGIAGLYR GFNISCVGII VYRGLYFGLY DSVKPVLLTG DLQDSFFASF ALGWVITNGA
301: GLASYPIDTV RRRMMMTSGE AVKYKSSLDA FKQILKNEGA KSLFKGAGAN ILRAVAGAGV LSGYDKLQLI VFGKKYGSGG A

Arabidopsis Description

AAC1AAC1 [Source:UniProtKB/TrEMBL;Acc:A0A178V544]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.