CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32779	Canola	cytosol, mitochondrion, nucleus	25.4	100.0
CDY20722	Canola	mitochondrion	40.73	65.16
Bra002816.1-P	Field mustard	cytosol	83.87	64.4
AT5G56450.1	Thale cress	cytosol	76.61	57.58
KRH52203	Soybean	cytosol, mitochondrion, peroxisome	62.1	47.98
KRH61511	Soybean	cytosol	60.89	47.78
VIT_04s0008g01130.t01	Wine grape	cytosol	61.69	47.37
GSMUA_Achr6P35840_001	Banana	cytosol	57.66	45.25
GSMUA_Achr4P00870_001	Banana	cytosol	56.85	44.2
TraesCS1A01G360400.1	Wheat	peroxisome	55.65	43.53
TraesCS1B01G376900.1	Wheat	peroxisome	56.05	43.3
Zm00001d038850_P001	Maize	peroxisome	56.45	42.68
HORVU1Hr1G080040.1	Barley	peroxisome	55.24	42.68
KXG22430	Sorghum	peroxisome	56.45	42.55
TraesCS1D01G364800.1	Wheat	peroxisome	56.05	42.51
Solyc08g063010.2.1	Tomato	endoplasmic reticulum, vacuole	49.19	39.74
CDY01045	Canola	golgi, mitochondrion, plastid	18.15	30.82
Os05t0539600-01	Rice	cytosol, mitochondrion, plastid	16.53	23.98
CDX85456	Canola	cytosol, mitochondrion, plastid	28.63	23.13
CDY02706	Canola	cytosol, mitochondrion, plastid	28.23	22.8
CDY14242	Canola	plastid	33.06	21.75
CDX97439	Canola	plastid	32.66	21.49
CDY09801	Canola	plastid	32.26	21.05
CDY32780	Canola	cytosol	11.69	21.01
CDX91117	Canola	plastid	32.26	21.0
CDX69638	Canola	mitochondrion, plastid	31.45	20.97
CDX70507	Canola	plastid	31.85	20.95
CDX78525	Canola	plastid	31.85	20.95
CDY58293	Canola	cytosol	22.98	20.5
CDY38426	Canola	cytosol	28.23	19.28
CDY16928	Canola	mitochondrion, plastid	28.63	18.88
CDX76233	Canola	mitochondrion, plastid	14.11	15.84
CDY42596	Canola	peroxisome	8.87	12.57
CDY01046	Canola	plastid	4.84	12.5
CDX85645	Canola	plastid	32.26	11.49

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	GO:A0A078ID03	UniProt:A0A078ID03	InterPro:Aden_trnslctor	EnsemblPlants:CDY47751
ProteinID:CDY47751	ProteinID:CDY47751.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00088032001	InterPro:IPR018108
InterPro:IPR023395	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00927	PFscan:PS50920
PANTHER:PTHR24089	PANTHER:PTHR24089:SF637	SUPFAM:SSF103506	UniParc:UPI0004EEC78A	SEG:seg	:

Description

BnaCnng15420DBnaCnng15420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ID03]

Coordinates

chrLK032733:-:32275..33511

Molecular Weight (calculated)

27846.2 Da

IEP (calculated)

10.690

GRAVY (calculated)

-0.526

Length

248 amino acids

Sequence
(BLAST)

001: MGIQEDPGAH SSNRNRRNPS SLPQTLKHFH RDFLAGAPQS REPSSSSRPR RATSPSSETP RGRDASKECS ISSTARSVKK AVLRYYPSVA LNFSLKDLYR
101: NILRNSSSQE NHRKDGVRGI YRGLPASLHG VIIHRGLYFG GFDTVKEVLS EDKELALWKR WVLAQGVTTS AGLASYPLDT VRRRIMMQSG IEHPMYSSTL
201: DCWKKIYRVE GLASFYRGAL SNMFRSTGSA AILVFYDEVK KFLNWGGI

Best Arabidopsis Sequence Match ( AT5G56450.1 )
(BLAST)

001: MCISKEDEED PSRNRRNQSP LSLPQTLKHF QKDLLAGAVM GGVVHTIVAP IERAKLLLQT QESNIAIVGD EGHAGKRRFK GMFDFIFRTV REEGVLSLWR
101: GNGSSVLRYY PSVALNFSLK DLYRSILRNS SSQENHIFSG ALANFMAGSA AGCTALIVVY PLDIAHTRLA ADIGKPEARQ FRGIHHFLST IHKKDGVRGI
201: YRGLPASLHG VIIHRGLYFG GFDTVKEIFS EDTKPELALW KRWGLAQAVT TSAGLASYPL DTVRRRIMMQ SGMEHPMYRS TLDCWKKIYR SEGLASFYRG
301: ALSNMFRSTG SAAILVFYDE VKRFLNWGGI

Arabidopsis Description

Probable ADP,ATP carrier protein At5g56450 [Source:UniProtKB/Swiss-Prot;Acc:Q9FM86]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.