Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42596 | Canola | peroxisome | 40.62 | 22.29 |
| CDX76233 | Canola | mitochondrion, plastid | 43.75 | 19.0 |
| CDY58293 | Canola | cytosol | 46.88 | 16.19 |
| CDY02706 | Canola | cytosol, mitochondrion, plastid | 50.0 | 15.64 |
| CDX85456 | Canola | cytosol, mitochondrion, plastid | 48.96 | 15.31 |
| CDY38426 | Canola | cytosol | 51.04 | 13.5 |
| CDY16928 | Canola | mitochondrion, plastid | 51.04 | 13.03 |
| CDY32780 | Canola | cytosol | 17.71 | 12.32 |
| CDX97439 | Canola | plastid | 40.62 | 10.34 |
| CDX69638 | Canola | mitochondrion, plastid | 38.54 | 9.95 |
| CDX70507 | Canola | plastid | 38.54 | 9.81 |
| CDY14242 | Canola | plastid | 38.54 | 9.81 |
| CDX78525 | Canola | plastid | 38.54 | 9.81 |
| CDY09801 | Canola | plastid | 38.54 | 9.74 |
| CDX91117 | Canola | plastid | 38.54 | 9.71 |
| CDX85645 | Canola | plastid | 38.54 | 5.32 |
| CDY47751 | Canola | nucleus, plastid | 12.5 | 4.84 |
| CDY01045 | Canola | golgi, mitochondrion, plastid | 4.17 | 2.74 |
| CDY20722 | Canola | mitochondrion | 4.17 | 2.58 |
| CDY32779 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY01046 | EnsemblPlantsGene:GSBRNA2T00111082001 | Gene3D:1.50.40.10 | GO:A0A078EIX2 | InterPro:IPR023395 | InterPro:Mt_carrier_dom_sf |
| ProteinID:CDY01046 | ProteinID:CDY01046.1 | SEG:seg | SUPFAM:SSF103506 | UniParc:UPI0004EE9867 | MapMan:35.2 |
Description
BnaC05g41540D
Coordinates
chrLK031923:-:879978..880361
Molecular Weight (calculated)
10411.8 Da
IEP (calculated)
10.592
GRAVY (calculated)
-0.129
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MGVAAAIVAK SAAAPIERVK LLLQNQGEMI KTGHLTRPTP ILATASSEYS EKKVFCPSGE ETKPTSYVIF LHRLPTLHLK VTSRPVSDAP KRKTVT
001: MVEQTQHPTI LQKVSGQLLS SSVSQDIRGY ASASKRPATY QKHAAYGNYS NAAFQYPLVA ASQIATTTSP VFVQAPGEKG FTNFAIDFMM GGVSAAVSKT
101: AAAPIERVKL LIQNQDEMLK AGRLTEPYKG IRDCFGRTIR DEGIGSLWRG NTANVIRYFP TQALNFAFKD YFKRLFNFKK DKDGYWKWFA GNLASGGAAG
201: ASSLLFVYSL DYARTRLAND SKSAKKGGGE RQFNGLVDVY KKTLKSDGIA GLYRGFNISC AGIIVYRGLY FGLYDSVKPV LLTGDLQDSF FASFALGWLI
301: TNGAGLASYP IDTVRRRMMM TSGEAVKYKS SFDAFSQIVK KEGAKSLFKG AGANILRAVA GAGVLAGYDK LQLIVFGKKY GSGGA
101: AAAPIERVKL LIQNQDEMLK AGRLTEPYKG IRDCFGRTIR DEGIGSLWRG NTANVIRYFP TQALNFAFKD YFKRLFNFKK DKDGYWKWFA GNLASGGAAG
201: ASSLLFVYSL DYARTRLAND SKSAKKGGGE RQFNGLVDVY KKTLKSDGIA GLYRGFNISC AGIIVYRGLY FGLYDSVKPV LLTGDLQDSF FASFALGWLI
301: TNGAGLASYP IDTVRRRMMM TSGEAVKYKS SFDAFSQIVK KEGAKSLFKG AGANILRAVA GAGVLAGYDK LQLIVFGKKY GSGGA
Arabidopsis Description
AAC2AAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF67]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.