CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P19560_001	Banana	cytosol	6.78	96.15
GSMUA_Achr8P25670_001	Banana	cytosol, mitochondrion, plastid	66.67	92.13
KRH43521	Soybean	cytosol, mitochondrion, plastid	91.6	87.11
KRH13934	Soybean	mitochondrion	91.06	86.38
GSMUA_Achr9P19840_001	Banana	mitochondrion	26.02	84.96
Solyc01g087070.2.1	Tomato	unclear	78.86	84.1
GSMUA_Achr3P11040_001	Banana	mitochondrion	82.11	83.01
AT3G08580.2	Thale cress	mitochondrion, plastid	84.01	81.36
GSMUA_Achr3P11890_001	Banana	cytosol, mitochondrion, plastid	85.91	81.07
VIT_06s0004g01910.t01	Wine grape	cytosol, mitochondrion, plastid	85.64	80.41
CDX69638	Canola	mitochondrion, plastid	80.76	80.11
CDY09801	Canola	plastid	82.38	80.0
CDX70507	Canola	plastid	81.57	79.84
KRH25624	Soybean	endoplasmic reticulum	80.22	79.78
AT5G13490.1	Thale cress	cytosol, mitochondrion, plastid	83.2	79.74
VIT_19s0177g00370.t01	Wine grape	cytosol, mitochondrion	30.62	79.58
CDX78525	Canola	plastid	81.3	79.58
Bra006203.1-P	Field mustard	plastid	81.3	79.58
CDX91117	Canola	plastid	82.11	79.53
PGSC0003DMT400017550	Potato	cytosol, mitochondrion, plastid	81.3	79.37
KRH55930	Soybean	mitochondrion	79.95	79.3
Bra008826.1-P	Field mustard	mitochondrion, plastid	79.67	78.82
KRH26962	Soybean	mitochondrion	78.32	78.75
KRH22368	Soybean	mitochondrion	78.32	78.75
KRH20836	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	47.43	77.43
Os02t0718900-01	Rice	mitochondrion	79.67	76.96
HORVU6Hr1G070780.1	Barley	plastid	78.32	76.05
TraesCS6D01G262700.1	Wheat	golgi, nucleus, unclear	78.05	75.79
TraesCS6A01G282200.1	Wheat	plastid	77.78	75.53
KRH23142	Soybean	cytosol, mitochondrion, plastid	80.76	75.44
Zm00001d051685_P002	Maize	plastid	78.86	75.19
Zm00001d017857_P002	Maize	plastid	78.86	74.81
KXG30875	Sorghum	plastid	78.32	74.68
TraesCS6B01G310600.1	Wheat	plastid	78.32	73.91
GSMUA_Achr10P...	Banana	unclear	83.74	68.51
VIT_13s0064g01050.t01	Wine grape	cytosol	85.09	65.83
GSMUA_Achr9P02190_001	Banana	golgi, mitochondrion, plastid	25.47	64.38
GSMUA_Achr1P19540_001	Banana	extracellular	15.18	60.87
KRH41838	Soybean	cytosol	47.7	56.05
KRH60537	Soybean	cytosol	47.43	55.73
CDX85645	Canola	plastid	82.38	43.68
KRH61511	Soybean	cytosol	31.44	36.71
KRH52203	Soybean	cytosol, mitochondrion, peroxisome	31.17	35.83
KRH04954	Soybean	cytosol	11.11	35.65

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100793257	MapMan:24.2.13	UniProt:A0A0R0GXN6	EMBL:ACUP02008314	InterPro:Aden_trnslctor
EnsemblPlantsGene:GLYMA_13G203400	GO:GO:0003674	GO:GO:0005215	GO:GO:0005471	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0015866	GO:GO:0015867	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0022857	GO:GO:0046902	GO:GO:0055085	InterPro:IPR018108	InterPro:IPR023395	ProteinID:KRH20833.1
EnsemblPlants:KRH20834	ProteinID:KRH20834	ProteinID:KRH20834.1	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf
PFAM:PF00153	PRINTS:PR00926	PRINTS:PR00927	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF654
SUPFAM:SSF103506	TMHMM:TMhelix	UniParc:UPI000233BD98	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:-:31741541..31744773

Molecular Weight (calculated)

40292.7 Da

IEP (calculated)

10.246

GRAVY (calculated)

-0.049

Length

369 amino acids

Sequence
(BLAST)

001: MVDQVQHPRI IEKVAGQQHL RTGLPLYHQW RSFANYSNGA LQYPVMPACR AATAASHVFV AAPSEKGHFL IDFLMGGVSA AVSKTAAAPI ERVKLLIQNQ
101: DEMIKAGRLS EPYKGIGDCF KRTMQEEGVV SLWRGNTANV IRYFPTQALN FAFKDYFKRL FNFRKDRDGY WKWFAGNLGS GGAAGASSLL FVYSLDYART
201: RLANDAKAAK KGGERQFNGL VDVYKKTLAS DGVAGLYRGF NISCVGIIVY RGLYFGMYDS LKPVLLTGSL QDSFFASFGL GWLITNGAGL ASYPIDTVRR
301: RMMMTSGEAV KYKSSMDAFT QILKNEGAKS LFKGAGANIL RAVAGAGVLA GYDKLQVIVF GKKYGSGGA

Best Arabidopsis Sequence Match ( AT5G13490.1 )
(BLAST)

001: MVEQTQHPTI LQKVSGQLLS SSVSQDIRGY ASASKRPATY QKHAAYGNYS NAAFQYPLVA ASQIATTTSP VFVQAPGEKG FTNFAIDFMM GGVSAAVSKT
101: AAAPIERVKL LIQNQDEMLK AGRLTEPYKG IRDCFGRTIR DEGIGSLWRG NTANVIRYFP TQALNFAFKD YFKRLFNFKK DKDGYWKWFA GNLASGGAAG
201: ASSLLFVYSL DYARTRLAND SKSAKKGGGE RQFNGLVDVY KKTLKSDGIA GLYRGFNISC AGIIVYRGLY FGLYDSVKPV LLTGDLQDSF FASFALGWLI
301: TNGAGLASYP IDTVRRRMMM TSGEAVKYKS SFDAFSQIVK KEGAKSLFKG AGANILRAVA GAGVLAGYDK LQLIVFGKKY GSGGA

Arabidopsis Description

AAC2AAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF67]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.