CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55930	Soybean	mitochondrion	98.11	97.85
KRH26962	Soybean	mitochondrion	92.18	93.19
KRH22368	Soybean	mitochondrion	91.64	92.64
VIT_12s0028g03380.t01	Wine grape	plastid	86.79	84.07
AT4G28390.1	Thale cress	mitochondrion	84.64	82.85
CDX97439	Canola	plastid	82.48	81.17
KRH20834	Soybean	mitochondrion	79.78	80.22
Bra010369.1-P	Field mustard	plastid	81.13	79.84
CDY14242	Canola	plastid	81.13	79.84
Solyc07g053830.2.1	Tomato	plastid	81.94	79.37
PGSC0003DMT400082806	Potato	cytosol, mitochondrion, plastid	81.94	79.17
KRH13934	Soybean	mitochondrion	82.48	78.66
KRH43521	Soybean	cytosol, mitochondrion, plastid	81.94	78.35
KRH20836	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	45.01	73.89
KRH23142	Soybean	cytosol, mitochondrion, plastid	77.09	72.41
GSMUA_Achr2P13860_001	Banana	cytosol	56.87	64.92
GSMUA_Achr4P27770_001	Banana	nucleus	81.94	64.27
KRH41838	Soybean	cytosol	49.06	57.96
KRH60537	Soybean	cytosol	48.52	57.32
KRH61511	Soybean	cytosol	31.27	36.71
KRH52203	Soybean	cytosol, mitochondrion, peroxisome	31.27	36.14
KRH04954	Soybean	cytosol	10.78	34.78

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100818408	MapMan:24.2.13	EMBL:ACUP02007299	InterPro:Aden_trnslctor	EnsemblPlantsGene:GLYMA_12G116300
GO:GO:0003674	GO:GO:0005215	GO:GO:0005471	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0015866	GO:GO:0015867	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0022857
GO:GO:0046902	GO:GO:0055085	UniProt:I1LS55	InterPro:IPR018108	InterPro:IPR023395	EnsemblPlants:KRH25624
ProteinID:KRH25624	ProteinID:KRH25624.1	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153
PRINTS:PR00926	PRINTS:PR00927	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF645	SUPFAM:SSF103506
TMHMM:TMhelix	UniParc:UPI0001CA9E73	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:11644661..11647774

Molecular Weight (calculated)

39774.1 Da

IEP (calculated)

10.284

GRAVY (calculated)

0.033

Length

371 amino acids

Sequence
(BLAST)

001: MADGPQHPSV VQKLAGQSYL VSRLSPNFNS RNYSATGSYV NGGMHSPGLA VVSPVSPVTV HAPAEKGVSG FLVDFLMGGV SAAVSKTAAA PIERVKLLIQ
101: NQDEMIKSGR LSEPYKGIGD CFARTMKDEG VIALWRGNTA NVIRYFPTQA LNFAFKDYFK RLFNFKKDKD GYWKWFAGNL ASGGAAGASS LLFVYSLDYA
201: RTRLANDAKA AKKGGERQFN GLVDVYRKTI KSDGVAGLYR GFNISCVGII VYRGLYFGMY DSLKPVVLVG GLQDSFFASF LLGWGITIGA GLASYPIDTV
301: RRRMMMTSGE AVKYKSSLHA FQTIVANEGA KSLFKGAGAN ILRAVAGAGV LAGYDKLQLI LFGKKYGSGG G

Best Arabidopsis Sequence Match ( AT4G28390.1 )
(BLAST)

001: MDGSKHPSVF QKLHGQSYLI NRLSPSVQAR GYCVSGAYVN GGLQSLLQPT SHGVGSSLIP HGSFPVLAHA PSEKTGTGFL IDFLMGGVSA AVSKTAAAPI
101: ERVKLLIQNQ DEMIKAGRLS EPYKGISDCF ARTVKDEGML ALWRGNTANV IRYFPTQALN FAFKDYFKRL FNFKKEKDGY WKWFAGNLAS GGAAGASSLL
201: FVYSLDYART RLANDAKAAK KGGQRQFNGM VDVYKKTIAS DGIVGLYRGF NISCVGIVVY RGLYFGLYDS LKPVVLVDGL QDSFLASFLL GWGITIGAGL
301: ASYPIDTVRR RMMMTSGEAV KYKSSLQAFS QIVKNEGAKS LFKGAGANIL RAVAGAGVLA GYDKLQLIVL GKKYGSGGG

Arabidopsis Description

AAC3ADP,ATP carrier protein 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49447]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.