Factsheet for VIT_13s0064g01050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 3
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g01910.t01	Wine grape	cytosol, mitochondrion, plastid	70.44	85.5
VIT_19s0177g00370.t01	Wine grape	cytosol, mitochondrion	25.37	85.21
KRH20834	Soybean	mitochondrion	65.83	85.09
KRH43521	Soybean	cytosol, mitochondrion, plastid	69.18	85.05
KRH13934	Soybean	mitochondrion	68.76	84.32
AT3G08580.2	Thale cress	mitochondrion, plastid	67.09	83.99
AT5G13490.1	Thale cress	cytosol, mitochondrion, plastid	66.25	82.08
CDX69638	Canola	mitochondrion, plastid	63.73	81.72
CDX70507	Canola	plastid	64.57	81.7
Bra006203.1-P	Field mustard	plastid	64.36	81.43
CDX78525	Canola	plastid	64.36	81.43
CDY09801	Canola	plastid	64.78	81.32
CDX91117	Canola	plastid	64.78	81.1
Bra008826.1-P	Field mustard	mitochondrion, plastid	62.89	80.43
Os02t0718900-01	Rice	mitochondrion	63.73	79.58
VIT_12s0028g03380.t01	Wine grape	plastid	63.31	78.85
TraesCS6D01G262700.1	Wheat	golgi, nucleus, unclear	62.47	78.42
TraesCS6A01G282200.1	Wheat	plastid	62.26	78.16
HORVU6Hr1G070780.1	Barley	plastid	62.26	78.16
KXG30875	Sorghum	plastid	63.31	78.04
Zm00001d051685_P002	Maize	plastid	63.1	77.78
Zm00001d017857_P002	Maize	plastid	63.1	77.38
TraesCS6B01G310600.1	Wheat	plastid	62.68	76.47
VIT_17s0000g04970.t01	Wine grape	mitochondrion	37.74	58.06
CDX85645	Canola	plastid	64.78	44.4
VIT_10s0116g01120.t01	Wine grape	plastid	12.16	39.46
VIT_04s0008g01130.t01	Wine grape	cytosol	25.16	37.15
VIT_00s1209g00010.t01	Wine grape	cytosol, plastid	11.32	35.29
VIT_03s0038g00080.t01	Wine grape	plastid	12.16	31.35
VIT_16s0039g00600.t01	Wine grape	cytosol	15.51	29.72

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100248265	wikigene:100248265	MapMan:24.2.13	EMBL:AM458382	InterPro:Aden_trnslctor
ProteinID:CAN81107	ProteinID:CAN81107.1	ProteinID:CCB49504	ProteinID:CCB49504.1	UniProt:F6HBF2	EMBL:FN595509
GO:GO:0003674	GO:GO:0005215	GO:GO:0005471	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0015866	GO:GO:0015867	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0022857
GO:GO:0046902	GO:GO:0055085	InterPro:IPR018108	InterPro:IPR023395	EntrezGene:LOC100248265	wikigene:LOC100248265
InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926	PRINTS:PR00927
PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF645	SUPFAM:SSF103506	TIGR:TC66006	TMHMM:TMhelix
UniParc:UPI000210A6E5	ArrayExpress:VIT_13s0064g01050	EnsemblPlantsGene:VIT_13s0064g01050	EnsemblPlants:VIT_13s0064g01050.t01	RefSeq:XP_002279748	RefSeq:XP_002279748.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:-:22922144..22926265

Molecular Weight (calculated)

52491.1 Da

IEP (calculated)

10.160

GRAVY (calculated)

-0.200

Length

477 amino acids

Sequence
(BLAST)

001: MIEVNKFCET ENQNSTKRVS ATHRQTANHT QASLKSEKML LKPVATTQFI FAVFTSSSLT GACVEISSTP ISPKFPERYS DRSETWRPRE DKMIDQPQYP
101: TIMQKVAGHL HHSQNIQAFH GRFQQPTLQQ RHSAYGNYTN AALQYPMCGA TFDPLMVGSN VSPVFVPAPK EKGLAGFAID FLMGGVSAAV SKTAAAPIER
201: VKLLIQNQDE MIKTGRLSEP YKGIGECFSR TIKDEGFMSL WRGNTANVIR YFPTQALNFA FKDYFKRLFN FKKDRDGYWK WFAGNLASGG AAGASSLLFV
301: YSLDYARTRL ANDAKAAKKG GERQFNGLVD VYRKTLKSDG IAGLYRGFNI SCVGIIVYRG LYFGMYDSLK PVVLTGGLQD SFFASFALGW LITNGAGLAS
401: YPIDTVRRRM MMTSGEAVKY KSSFDAFAQI LKNEGAKSLF KGAGANILRA VAGAGVLAGY DKLQVIVFGK KYGSGGA

Best Arabidopsis Sequence Match ( AT5G13490.1 )
(BLAST)

001: MVEQTQHPTI LQKVSGQLLS SSVSQDIRGY ASASKRPATY QKHAAYGNYS NAAFQYPLVA ASQIATTTSP VFVQAPGEKG FTNFAIDFMM GGVSAAVSKT
101: AAAPIERVKL LIQNQDEMLK AGRLTEPYKG IRDCFGRTIR DEGIGSLWRG NTANVIRYFP TQALNFAFKD YFKRLFNFKK DKDGYWKWFA GNLASGGAAG
201: ASSLLFVYSL DYARTRLAND SKSAKKGGGE RQFNGLVDVY KKTLKSDGIA GLYRGFNISC AGIIVYRGLY FGLYDSVKPV LLTGDLQDSF FASFALGWLI
301: TNGAGLASYP IDTVRRRMMM TSGEAVKYKS SFDAFSQIVK KEGAKSLFKG AGANILRAVA GAGVLAGYDK LQLIVFGKKY GSGGA

Arabidopsis Description

AAC2AAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF67]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.