Factsheet for TraesCS6B01G310600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G262700.1	Wheat	golgi, nucleus, unclear	96.42	99.21
TraesCS6A01G282200.1	Wheat	plastid	95.91	98.68
HORVU6Hr1G070780.1	Barley	plastid	94.63	97.37
GSMUA_Achr1P19560_001	Banana	cytosol	6.39	96.15
Os02t0718900-01	Rice	mitochondrion	90.54	92.67
GSMUA_Achr8P25670_001	Banana	cytosol, mitochondrion, plastid	62.66	91.76
KXG30875	Sorghum	plastid	87.98	88.89
Zm00001d051685_P002	Maize	plastid	87.21	88.11
Zm00001d017857_P002	Maize	plastid	87.21	87.66
GSMUA_Achr3P11040_001	Banana	mitochondrion	78.26	83.84
GSMUA_Achr9P19840_001	Banana	mitochondrion	23.79	82.3
Solyc01g087070.2.1	Tomato	unclear	72.63	82.08
AT3G08580.2	Thale cress	mitochondrion, plastid	78.26	80.31
GSMUA_Achr3P11890_001	Banana	cytosol, mitochondrion, plastid	80.05	80.05
VIT_19s0177g00370.t01	Wine grape	cytosol, mitochondrion	28.64	78.87
CDX70507	Canola	plastid	75.7	78.51
KRH20834	Soybean	mitochondrion	73.91	78.32
CDX78525	Canola	plastid	75.45	78.25
Bra006203.1-P	Field mustard	plastid	75.45	78.25
VIT_06s0004g01910.t01	Wine grape	cytosol, mitochondrion, plastid	78.52	78.12
KRH13934	Soybean	mitochondrion	77.24	77.64
KRH43521	Soybean	cytosol, mitochondrion, plastid	76.98	77.58
CDX91117	Canola	plastid	75.45	77.43
CDX69638	Canola	mitochondrion, plastid	73.66	77.42
AT5G13490.1	Thale cress	cytosol, mitochondrion, plastid	75.96	77.14
CDY09801	Canola	plastid	74.94	77.11
PGSC0003DMT400017550	Potato	cytosol, mitochondrion, plastid	74.17	76.72
Bra008826.1-P	Field mustard	mitochondrion, plastid	72.63	76.14
TraesCS7B01G116600.1	Wheat	cytosol, mitochondrion, plastid	70.08	72.3
GSMUA_Achr10P...	Banana	unclear	81.59	70.73
GSMUA_Achr9P02190_001	Banana	golgi, mitochondrion, plastid	24.04	64.38
VIT_13s0064g01050.t01	Wine grape	cytosol	76.47	62.68
GSMUA_Achr1P19540_001	Banana	extracellular	13.04	55.43
TraesCS3B01G050500.1	Wheat	mitochondrion	46.8	54.79
TraesCS3B01G033100.1	Wheat	cytosol	46.55	54.33
CDX85645	Canola	plastid	75.45	42.39
TraesCS1B01G376900.1	Wheat	peroxisome	30.18	36.76

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	InterPro:Aden_trnslctor	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0022857	GO:GO:0055085	InterPro:IPR018108	InterPro:IPR023395
InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926	PRINTS:PR00927
PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF645	SUPFAM:SSF103506	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G310600
EnsemblPlants:TraesCS6B01G310600.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:556486427..556488103

Molecular Weight (calculated)

42846.7 Da

IEP (calculated)

10.148

GRAVY (calculated)

-0.110

Length

391 amino acids

Sequence
(BLAST)

001: MLWFDCCCRS EMADRANHPS VMQKFGGQFH LASSFSEGVR ARNICPSVPS YERRFTTSSY MTQNLGISVP IMSSSPMFAN APPEKKGVKN FAIDFLMGGV
101: SAAVSKTAAA PIERVKLLIQ NQDEMIKAGR LSEPYKGIGD CFGRTIKDEG FGSLWRGNTA NVIRYFPTQA LNFAFKDYFK RMFNFKKDKD GYWKWFGGNL
201: ASGGAAGASS LFFVYSLDYA RTRLANDAKA SKGGGERQFN GLVDVYRKTL KSDGIAGLYR GFNISCVGII VYRGLYFGLY DSLKPVLLTG TLQDNFFASF
301: ALGWLITNGA GLASYPIDTV RRRMMMTSGE AVKYKSSLDA FQQILKKEGA KSLFKGAGAN ILRAIAGAGV LSGYDQLQIL FFGKKYGSGG A

Best Arabidopsis Sequence Match ( AT5G13490.1 )
(BLAST)

001: MVEQTQHPTI LQKVSGQLLS SSVSQDIRGY ASASKRPATY QKHAAYGNYS NAAFQYPLVA ASQIATTTSP VFVQAPGEKG FTNFAIDFMM GGVSAAVSKT
101: AAAPIERVKL LIQNQDEMLK AGRLTEPYKG IRDCFGRTIR DEGIGSLWRG NTANVIRYFP TQALNFAFKD YFKRLFNFKK DKDGYWKWFA GNLASGGAAG
201: ASSLLFVYSL DYARTRLAND SKSAKKGGGE RQFNGLVDVY KKTLKSDGIA GLYRGFNISC AGIIVYRGLY FGLYDSVKPV LLTGDLQDSF FASFALGWLI
301: TNGAGLASYP IDTVRRRMMM TSGEAVKYKS SFDAFSQIVK KEGAKSLFKG AGANILRAVA GAGVLAGYDK LQLIVFGKKY GSGGA

Arabidopsis Description

AAC2AAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF67]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.