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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • mitochondrion 6
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
plastid: 22908117
nucleus: 25464976
unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc11g062130.1.1 Tomato plastid 99.48 98.7
PGSC0003DMT400035380 Potato cytosol, mitochondrion, plastid 98.96 98.19
GSMUA_Achr1P19560_001 Banana cytosol 6.53 96.15
GSMUA_Achr8P25670_001 Banana cytosol, mitochondrion, plastid 64.23 92.13
GSMUA_Achr9P19840_001 Banana mitochondrion 25.59 86.73
Solyc01g087070.2.1 Tomato unclear 76.76 84.97
GSMUA_Achr3P11040_001 Banana mitochondrion 80.94 84.93
GSMUA_Achr3P11890_001 Banana cytosol, mitochondrion, plastid 83.29 81.59
Solyc07g053830.2.1 Tomato plastid 77.81 77.81
Solyc01g014210.1.1 Tomato plastid 57.7 74.41
GSMUA_Achr10P... Banana unclear 83.29 70.73
GSMUA_Achr9P02190_001 Banana golgi, mitochondrion, plastid 24.8 65.07
GSMUA_Achr1P19540_001 Banana extracellular 14.36 59.78
Solyc06g069410.2.1 Tomato cytosol, mitochondrion, plastid 48.56 59.42
Solyc08g063010.2.1 Tomato endoplasmic reticulum, vacuole 21.93 27.36
Solyc08g063030.2.1 Tomato cytosol 16.71 25.7
Protein Annotations
Gene3D:1.50.40.10MapMan:24.2.13InterPro:Aden_trnslctorGO:GO:0003674GO:GO:0005215GO:GO:0005471
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005743
GO:GO:0006810GO:GO:0008150GO:GO:0009987GO:GO:0015866GO:GO:0015867GO:GO:0016020
GO:GO:0016021GO:GO:0016043GO:GO:0022857GO:GO:0046902GO:GO:0055085InterPro:IPR018108
InterPro:IPR023395UniProt:K4D930InterPro:Mit_carrierInterPro:Mitochondrial_sb/sol_carrierInterPro:Mt_carrier_dom_sfPFAM:PF00153
PRINTS:PR00926PRINTS:PR00927PFscan:PS50920PANTHER:PTHR24089PANTHER:PTHR24089:SF645SUPFAM:SSF103506
EnsemblPlantsGene:Solyc11g062190.1EnsemblPlants:Solyc11g062190.1.1TMHMM:TMhelixUniParc:UPI000276952DSEG:seg:
Description
No Description!
Coordinates
chr11:+:49079097..49080724
Molecular Weight (calculated)
41738.0 Da
IEP (calculated)
10.301
GRAVY (calculated)
-0.139
Length
383 amino acids
Sequence
(BLAST)
001: MNQHPTVFQK AANQLHLRSS LSQDVHARYG GVQPAIYQRH FAYGNYSNAA LQRGQATQDL SLITSNASPV FVQAPQEKGF AAFATDFLMG GVSAAVSKTA
101: AAPIERVKLL IQNQDEMLKA GRLSEPYKGI GDCFGRTIKE EGFGSLWRGN TANVIRYFPT QALNFAFKDY FKRLFNFKKD RDGYWKWFAG NLASGGAAGA
201: SSLFFVYSLD YARTRLANDA KASKKGGERQ FNGLVDVYRK TLKSDGIAGL YRGFNISCVG IIVYRGLYFG MYDSLKPVLL TGNLQDSFFA SFALGWLITN
301: GAGLASYPID TVRRRMMMTS GEAVKYKSSL DAFSQIVKNE GPKSLFKGAG ANILRAVAGA GVLAGYDKLQ VLVLGKKYGS GGA
Best Arabidopsis Sequence Match ( AT5G13490.1 )
(BLAST)
001: MVEQTQHPTI LQKVSGQLLS SSVSQDIRGY ASASKRPATY QKHAAYGNYS NAAFQYPLVA ASQIATTTSP VFVQAPGEKG FTNFAIDFMM GGVSAAVSKT
101: AAAPIERVKL LIQNQDEMLK AGRLTEPYKG IRDCFGRTIR DEGIGSLWRG NTANVIRYFP TQALNFAFKD YFKRLFNFKK DKDGYWKWFA GNLASGGAAG
201: ASSLLFVYSL DYARTRLAND SKSAKKGGGE RQFNGLVDVY KKTLKSDGIA GLYRGFNISC AGIIVYRGLY FGLYDSVKPV LLTGDLQDSF FASFALGWLI
301: TNGAGLASYP IDTVRRRMMM TSGEAVKYKS SFDAFSQIVK KEGAKSLFKG AGANILRAVA GAGVLAGYDK LQLIVFGKKY GSGGA
Arabidopsis Description
AAC2AAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF67]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.