Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 6
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
22908117
nucleus: 25464976 unclear: 26455813 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc11g062130.1.1 | Tomato | plastid | 99.48 | 98.7 |
PGSC0003DMT400035380 | Potato | cytosol, mitochondrion, plastid | 98.96 | 98.19 |
GSMUA_Achr1P19560_001 | Banana | cytosol | 6.53 | 96.15 |
GSMUA_Achr8P25670_001 | Banana | cytosol, mitochondrion, plastid | 64.23 | 92.13 |
GSMUA_Achr9P19840_001 | Banana | mitochondrion | 25.59 | 86.73 |
Solyc01g087070.2.1 | Tomato | unclear | 76.76 | 84.97 |
GSMUA_Achr3P11040_001 | Banana | mitochondrion | 80.94 | 84.93 |
GSMUA_Achr3P11890_001 | Banana | cytosol, mitochondrion, plastid | 83.29 | 81.59 |
Solyc07g053830.2.1 | Tomato | plastid | 77.81 | 77.81 |
Solyc01g014210.1.1 | Tomato | plastid | 57.7 | 74.41 |
GSMUA_Achr10P... | Banana | unclear | 83.29 | 70.73 |
GSMUA_Achr9P02190_001 | Banana | golgi, mitochondrion, plastid | 24.8 | 65.07 |
GSMUA_Achr1P19540_001 | Banana | extracellular | 14.36 | 59.78 |
Solyc06g069410.2.1 | Tomato | cytosol, mitochondrion, plastid | 48.56 | 59.42 |
Solyc08g063010.2.1 | Tomato | endoplasmic reticulum, vacuole | 21.93 | 27.36 |
Solyc08g063030.2.1 | Tomato | cytosol | 16.71 | 25.7 |
Protein Annotations
Gene3D:1.50.40.10 | MapMan:24.2.13 | InterPro:Aden_trnslctor | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005471 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005743 |
GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015866 | GO:GO:0015867 | GO:GO:0016020 |
GO:GO:0016021 | GO:GO:0016043 | GO:GO:0022857 | GO:GO:0046902 | GO:GO:0055085 | InterPro:IPR018108 |
InterPro:IPR023395 | UniProt:K4D930 | InterPro:Mit_carrier | InterPro:Mitochondrial_sb/sol_carrier | InterPro:Mt_carrier_dom_sf | PFAM:PF00153 |
PRINTS:PR00926 | PRINTS:PR00927 | PFscan:PS50920 | PANTHER:PTHR24089 | PANTHER:PTHR24089:SF645 | SUPFAM:SSF103506 |
EnsemblPlantsGene:Solyc11g062190.1 | EnsemblPlants:Solyc11g062190.1.1 | TMHMM:TMhelix | UniParc:UPI000276952D | SEG:seg | : |
Description
No Description!
Coordinates
chr11:+:49079097..49080724
Molecular Weight (calculated)
41738.0 Da
IEP (calculated)
10.301
GRAVY (calculated)
-0.139
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQHPTVFQK AANQLHLRSS LSQDVHARYG GVQPAIYQRH FAYGNYSNAA LQRGQATQDL SLITSNASPV FVQAPQEKGF AAFATDFLMG GVSAAVSKTA
101: AAPIERVKLL IQNQDEMLKA GRLSEPYKGI GDCFGRTIKE EGFGSLWRGN TANVIRYFPT QALNFAFKDY FKRLFNFKKD RDGYWKWFAG NLASGGAAGA
201: SSLFFVYSLD YARTRLANDA KASKKGGERQ FNGLVDVYRK TLKSDGIAGL YRGFNISCVG IIVYRGLYFG MYDSLKPVLL TGNLQDSFFA SFALGWLITN
301: GAGLASYPID TVRRRMMMTS GEAVKYKSSL DAFSQIVKNE GPKSLFKGAG ANILRAVAGA GVLAGYDKLQ VLVLGKKYGS GGA
101: AAPIERVKLL IQNQDEMLKA GRLSEPYKGI GDCFGRTIKE EGFGSLWRGN TANVIRYFPT QALNFAFKDY FKRLFNFKKD RDGYWKWFAG NLASGGAAGA
201: SSLFFVYSLD YARTRLANDA KASKKGGERQ FNGLVDVYRK TLKSDGIAGL YRGFNISCVG IIVYRGLYFG MYDSLKPVLL TGNLQDSFFA SFALGWLITN
301: GAGLASYPID TVRRRMMMTS GEAVKYKSSL DAFSQIVKNE GPKSLFKGAG ANILRAVAGA GVLAGYDKLQ VLVLGKKYGS GGA
001: MVEQTQHPTI LQKVSGQLLS SSVSQDIRGY ASASKRPATY QKHAAYGNYS NAAFQYPLVA ASQIATTTSP VFVQAPGEKG FTNFAIDFMM GGVSAAVSKT
101: AAAPIERVKL LIQNQDEMLK AGRLTEPYKG IRDCFGRTIR DEGIGSLWRG NTANVIRYFP TQALNFAFKD YFKRLFNFKK DKDGYWKWFA GNLASGGAAG
201: ASSLLFVYSL DYARTRLAND SKSAKKGGGE RQFNGLVDVY KKTLKSDGIA GLYRGFNISC AGIIVYRGLY FGLYDSVKPV LLTGDLQDSF FASFALGWLI
301: TNGAGLASYP IDTVRRRMMM TSGEAVKYKS SFDAFSQIVK KEGAKSLFKG AGANILRAVA GAGVLAGYDK LQLIVFGKKY GSGGA
101: AAAPIERVKL LIQNQDEMLK AGRLTEPYKG IRDCFGRTIR DEGIGSLWRG NTANVIRYFP TQALNFAFKD YFKRLFNFKK DKDGYWKWFA GNLASGGAAG
201: ASSLLFVYSL DYARTRLAND SKSAKKGGGE RQFNGLVDVY KKTLKSDGIA GLYRGFNISC AGIIVYRGLY FGLYDSVKPV LLTGDLQDSF FASFALGWLI
301: TNGAGLASYP IDTVRRRMMM TSGEAVKYKS SFDAFSQIVK KEGAKSLFKG AGANILRAVA GAGVLAGYDK LQLIVFGKKY GSGGA
Arabidopsis Description
AAC2AAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF67]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.