Factsheet for Solyc11g062130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 25464976
plastid: 26371478
unclear: 26455813
mitochondrion: 26471654

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26471654 doi

O López-Vidal, D Camejo, F Rivera-Cabrera, M Konigsberg, JM Villa-Hernández, JA Mendoza-Espinoza, LJ Pérez-Flores, F Sevilla, A Jiménez, F Díaz de León-Sánchez

Centro de Edafología y Biología Aplicada del Segura, Consejo Superior de Investigaciones Científicas, Campus Universitario de Espinardo, 30100 Murcia, Spain., Cátedra Amelia Sámano Bishop, Universidad Autónoma Metropolitana, Colegio de Ciencias y Humanidades, Plantel Casa Libertad Universidad Autónoma de la Ciudad de México, Mexico., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico. Electronic address: fdls@xanum.uam.mx., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico. Electronic address: omarlopezvidal@yahoo.com.mx.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g062190.1.1	Tomato	nucleus	98.7	99.48
PGSC0003DMT400035380	Potato	cytosol, mitochondrion, plastid	98.96	98.96
GSMUA_Achr1P19560_001	Banana	cytosol	6.48	96.15
GSMUA_Achr8P25670_001	Banana	cytosol, mitochondrion, plastid	63.47	91.76
GSMUA_Achr9P19840_001	Banana	mitochondrion	25.65	87.61
GSMUA_Achr3P11040_001	Banana	mitochondrion	80.31	84.93
Solyc01g087070.2.1	Tomato	unclear	75.91	84.68
GSMUA_Achr3P11890_001	Banana	cytosol, mitochondrion, plastid	82.64	81.59
Solyc07g053830.2.1	Tomato	plastid	77.2	77.81
Solyc01g014210.1.1	Tomato	plastid	57.77	75.08
GSMUA_Achr10P...	Banana	unclear	83.16	71.18
GSMUA_Achr9P02190_001	Banana	golgi, mitochondrion, plastid	24.61	65.07
GSMUA_Achr1P19540_001	Banana	extracellular	14.25	59.78
Solyc06g069410.2.1	Tomato	cytosol, mitochondrion, plastid	48.19	59.42
Solyc08g063010.2.1	Tomato	endoplasmic reticulum, vacuole	22.28	28.01
Solyc08g063030.2.1	Tomato	cytosol	16.84	26.1

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	InterPro:Aden_trnslctor	GO:GO:0003674	GO:GO:0005215	GO:GO:0005471
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015866	GO:GO:0015867	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0022857	GO:GO:0046902	GO:GO:0055085	InterPro:IPR018108
InterPro:IPR023395	UniProt:K4D925	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153
PRINTS:PR00926	PRINTS:PR00927	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF645	SUPFAM:SSF103506
EnsemblPlantsGene:Solyc11g062130.1	EnsemblPlants:Solyc11g062130.1.1	TMHMM:TMhelix	UniParc:UPI0002769528	SEG:seg	:

Description

No Description!

Coordinates

chr11:+:49000710..49002351

Molecular Weight (calculated)

42069.4 Da

IEP (calculated)

10.265

GRAVY (calculated)

-0.145

Length

386 amino acids

Sequence
(BLAST)

001: MADMNQHPTV FQKAANQLHL RSSLSQDVHA RYGGVQPAIY QRHFAYGNYS NAGLQRGQAT QDLSLITSNA SPVFVQAPQE KGFAAFATDF LMGGVSAAVS
101: KTAAAPIERV KLLIQNQDEM LKAGRLSEPY KGIGDCFGRT IKEEGFGSLW RGNTANVIRY FPTQALNFAF KDYFKRLFNF KKDRDGYWKW FAGNLASGGA
201: AGASSLFFVY SLDYARTRLA NDAKASKKGG ERQFNGLVDV YRKTLKSDGI AGLYRGFNIS CVGIIVYRGL YFGMYDSLKP VLLTGNLQDS FFASFALGWL
301: ITNGAGLASY PIDTVRRRMM MTSGEAVKYR SSLDAFSQIV KNEGPKSLFK GAGANILRAV AGAGVLAGYD KLQVLVLGKK YGSGGA

Best Arabidopsis Sequence Match ( AT3G08580.1 )
(BLAST)

001: MVDQVQHPTI AQKAAGQFMR SSVSKDVQVG YQRPSMYQRH ATYGNYSNAA FQFPPTSRML ATTASPVFVQ TPGEKGFTNF ALDFLMGGVS AAVSKTAAAP
101: IERVKLLIQN QDEMIKAGRL SEPYKGIGDC FGRTIKDEGF GSLWRGNTAN VIRYFPTQAL NFAFKDYFKR LFNFKKDRDG YWKWFAGNLA SGGAAGASSL
201: LFVYSLDYAR TRLANDAKAA KKGGGGRQFD GLVDVYRKTL KTDGIAGLYR GFNISCVGII VYRGLYFGLY DSVKPVLLTG DLQDSFFASF ALGWVITNGA
301: GLASYPIDTV RRRMMMTSGE AVKYKSSLDA FKQILKNEGA KSLFKGAGAN ILRAVAGAGV LSGYDKLQLI VFGKKYGSGG A

Arabidopsis Description

AAC1AAC1 [Source:UniProtKB/TrEMBL;Acc:A0A178V544]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.