Factsheet for Solyc01g014210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P19560_001	Banana	cytosol	7.74	88.46
PGSC0003DMT400081472	Potato	plastid	82.15	63.05
Solyc11g062130.1.1	Tomato	plastid	75.08	57.77
Solyc11g062190.1.1	Tomato	nucleus	74.41	57.7
GSMUA_Achr8P25670_001	Banana	cytosol, mitochondrion, plastid	51.18	56.93
GSMUA_Achr3P11040_001	Banana	mitochondrion	68.01	55.34
Solyc01g087070.2.1	Tomato	unclear	61.62	52.89
GSMUA_Achr3P11890_001	Banana	cytosol, mitochondrion, plastid	68.01	51.66
Solyc07g053830.2.1	Tomato	plastid	66.33	51.44
GSMUA_Achr9P19840_001	Banana	mitochondrion	18.52	48.67
GSMUA_Achr10P...	Banana	unclear	71.38	47.01
Solyc06g069410.2.1	Tomato	cytosol, mitochondrion, plastid	42.42	40.26
GSMUA_Achr9P02190_001	Banana	golgi, mitochondrion, plastid	16.84	34.25
GSMUA_Achr1P19540_001	Banana	extracellular	8.42	27.17
Solyc08g063030.2.1	Tomato	cytosol	17.85	21.29
Solyc08g063010.2.1	Tomato	endoplasmic reticulum, vacuole	20.2	19.54

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	InterPro:Aden_trnslctor	GO:GO:0003674	GO:GO:0005215	GO:GO:0005471
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015866	GO:GO:0015867	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0022857	GO:GO:0046902	GO:GO:0055085	InterPro:IPR018108
InterPro:IPR023395	UniProt:K4AU58	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153
PRINTS:PR00926	PRINTS:PR00927	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF645	SUPFAM:SSF103506
EnsemblPlantsGene:Solyc01g014210.1	EnsemblPlants:Solyc01g014210.1.1	TMHMM:TMhelix	UniParc:UPI00027622F7	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:11843325..11844727

Molecular Weight (calculated)

33203.4 Da

IEP (calculated)

10.335

GRAVY (calculated)

-0.086

Length

297 amino acids

Sequence
(BLAST)

001: MADNQHPTVY QKVAIQMPLS SSISQDVHAH YGSIQRLALS QRRFQNVFVQ ALQEKGVSAF ATNFLMGGVS AAVSKTTDAP IERVKILIQN QDEVIKAGRL
101: LEPYKGIGDI FRRTIKDEGF SSLWRGNTAN VFRYFRTQAL NFALKDYFKS LFNFNKDRDG CKEGSGGRQF DGLVDVYRKK LKSDGVVGLY CGFNISCVGI
201: IVFRGLYFGM YNSLKPVLLT GKMEVSYPSI FIISRFKRRM MMTSGEAVKY NRLFDAFNQI LNEGPKSLCK GAGANVRRAV AGAGVLVGYD KLQVIIF

Best Arabidopsis Sequence Match ( AT3G08580.1 )
(BLAST)

001: MVDQVQHPTI AQKAAGQFMR SSVSKDVQVG YQRPSMYQRH ATYGNYSNAA FQFPPTSRML ATTASPVFVQ TPGEKGFTNF ALDFLMGGVS AAVSKTAAAP
101: IERVKLLIQN QDEMIKAGRL SEPYKGIGDC FGRTIKDEGF GSLWRGNTAN VIRYFPTQAL NFAFKDYFKR LFNFKKDRDG YWKWFAGNLA SGGAAGASSL
201: LFVYSLDYAR TRLANDAKAA KKGGGGRQFD GLVDVYRKTL KTDGIAGLYR GFNISCVGII VYRGLYFGLY DSVKPVLLTG DLQDSFFASF ALGWVITNGA
301: GLASYPIDTV RRRMMMTSGE AVKYKSSLDA FKQILKNEGA KSLFKGAGAN ILRAVAGAGV LSGYDKLQLI VFGKKYGSGG A

Arabidopsis Description

AAC1AAC1 [Source:UniProtKB/TrEMBL;Acc:A0A178V544]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.