Factsheet for VIT_07s0005g00880.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g01700.t01	Wine grape	cytosol	74.29	90.84
KRH69267	Soybean	cytosol	83.6	88.82
AT2G47510.1	Thale cress	mitochondrion	87.85	88.21
Bra004450.1-P	Field mustard	mitochondrion	83.2	87.82
KRH69266	Soybean	mitochondrion	86.44	86.26
GSMUA_Achr11P...	Banana	mitochondrion	86.03	85.34
Solyc06g009830.2.1	Tomato	cytosol, mitochondrion, peroxisome	31.58	85.25
Solyc09g075450.2.1	Tomato	plastid	85.02	85.02
KXG39416	Sorghum	mitochondrion	85.63	84.94
TraesCS4A01G137100.1	Wheat	mitochondrion	84.62	84.62
TraesCS4B01G167200.1	Wheat	golgi, unclear	84.62	84.62
TraesCS4D01G170200.1	Wheat	plastid	84.62	84.62
Os03t0337900-01	Rice	mitochondrion	85.43	84.06
Zm00001d029084_P001	Maize	mitochondrion	84.62	83.94
Zm00001d029088_P002	Maize	mitochondrion	30.97	83.61
HORVU4Hr1G049590.3	Barley	plastid	84.41	78.09
AT5G50950.1	Thale cress	cytosol	79.76	77.25
KRH31845	Soybean	mitochondrion	86.23	76.34
Bra021400.1-P	Field mustard	mitochondrion	72.06	58.27
VIT_14s0060g01690.t01	Wine grape	mitochondrion	10.73	56.99
Bra021413.1-P	Field mustard	cytosol	46.15	55.47
Zm00001d048743_P001	Maize	mitochondrion	21.66	38.21

Protein Annotations

KEGG:00020+4.2.1.2	KEGG:00620+4.2.1.2	KEGG:00720+4.2.1.2	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10
EntrezGene:100264013	wikigene:100264013	MapMan:2.3.7	ProteinID:CBI36898	ProteinID:CBI36898.3	UniProt:D7U2D2
EMBL:FN596502	InterPro:Fum_hydII	InterPro:Fumarase/histidase_N	InterPro:Fumarase_C_C	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N
InterPro:Fumarate_lyase_fam	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004333
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006091	GO:GO:0006099	GO:GO:0006106	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016829	GO:GO:0045239	InterPro:IPR024083	InterPro:L-Aspartase-like	EntrezGene:LOC100264013
wikigene:LOC100264013	HAMAP:MF_00743	PFAM:PF00206	PFAM:PF10415	PRINTS:PR00149	ScanProsite:PS00163
PANTHER:PTHR11444	PANTHER:PTHR11444:SF1	SUPFAM:SSF48557	TIGR:TC64121	TIGRFAMs:TIGR00979	UniParc:UPI000198386A
ArrayExpress:VIT_07s0005g00880	EnsemblPlantsGene:VIT_07s0005g00880	EnsemblPlants:VIT_07s0005g00880.t01	unigene:Vvi.14241	RefSeq:XP_002273033	RefSeq:XP_002273033.1

Description

No Description!

Coordinates

chr7:-:3484639..3492123

Molecular Weight (calculated)

53535.6 Da

IEP (calculated)

8.033

GRAVY (calculated)

-0.175

Length

494 amino acids

Sequence
(BLAST)

001: MMMYAASRRL CGGSAGSPLL GLRYMCLRSL STSFREEKDT FGPILVPSDK LWGAQTQRSL QNFDIGGERE QMPEPIIRAF GILKKCAAKV NMEYGLDPSI
101: GKAIMQAAQE VSEGKLNDHF PLVIWQTGSG TQSNMNANEV IANRAAEILG HQRGEKYVHP NDHVNRSQSS NDTFPTVMHI AAATEINSRL IPSLKHLETA
201: LHSKSIEFKD IIKIGRTHTQ DATPLTLGQE FSGYYTQVKY GIDRVTCTLP RMYQLAQGGT AVGTGLNTKK GFDVKIARAV AEETNLPFVT AENKFEALAA
301: HDAFVETSGS VNTVATSLMK IANDIRLLGS GPRCGLGELI LPENEPGSSI MPGKVNPTQC EALTMVCAQV MGNHVAITVG GSNGHFELNV FKPLIASGLL
401: RSIRLLGDAS ASFEKNCVRG IQANKERILK LLHESLMLVT SLNPKIGYDN AAAVAKKAHK EGRTLKEAAL NLGVLTSEEF DQLVVPEKMI GPSD

Best Arabidopsis Sequence Match ( AT2G47510.1 )
(BLAST)

001: MSIYVASRRL SGGTTVTALR YATSLRSYST SFREERDTFG PIQVPSDKLW GAQTQRSLQN FEIGGERERM PEPIVRAFGV LKKCAAKVNM EYGLDPTIGK
101: AIMQAAQEVA EGKLNDHFPL VVWQTGSGTQ SNMNANEVIA NRAAEILGRK RGEKCVHPND HVNRSQSSND TFPTVMHIAA ATEINSRLIP SLKTLHSTLE
201: SKSFEFKDIV KIGRTHTQDA TPLTLGQEFG GYATQVKYGL NRVTCTLPRL YQLAQGGTAV GTGLNTKKGF DVKIAAAVAE ETNLPFVTAE NKFEALAAHD
301: ACVETSGSLN TIATSLMKIA NDIRFLGSGP RCGLGELVLP ENEPGSSIMP GKVNPTQCEA LTMVCAQVMG NHVAVTVGGS NGHFELNVFK PVIASALLHS
401: VRLIADASAS FEKNCVRGIE ANRERISKLL HESLMLVTSL NPKIGYDNAA AVAKKAHKEG CTLKEAALNL GVLTAEEFDT LVVPEKMIGP SD

Arabidopsis Description

FUM1FUM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMD4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.