Factsheet for Solyc09g075450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 9
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g009830.2.1	Tomato	cytosol, mitochondrion, peroxisome	32.79	88.52
VIT_14s0060g01700.t01	Wine grape	cytosol	70.85	86.63
CDY51427	Canola	cytosol	62.55	86.55
AT2G47510.1	Thale cress	mitochondrion	84.82	85.16
VIT_07s0005g00880.t01	Wine grape	mitochondrion	85.02	85.02
Bra004450.1-P	Field mustard	mitochondrion	80.36	84.83
Solyc06g009820.2.1	Tomato	cytosol, mitochondrion, peroxisome	24.09	80.95
Solyc06g009840.2.1	Tomato	plastid	25.71	76.97
AT5G50950.1	Thale cress	cytosol	78.95	76.47
VIT_14s0060g01690.t01	Wine grape	mitochondrion	11.13	59.14
Bra021400.1-P	Field mustard	mitochondrion	70.04	56.63
Bra021413.1-P	Field mustard	cytosol	45.14	54.26
KRH30057	Soybean	cytosol	6.88	41.98
CDY57716	Canola	nucleus	4.25	21.0
CDY51426	Canola	mitochondrion	1.82	3.93

Protein Annotations

KEGG:00020+4.2.1.2	KEGG:00620+4.2.1.2	KEGG:00720+4.2.1.2	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10
MapMan:2.3.7	InterPro:Fum_hydII	InterPro:Fumarase/histidase_N	InterPro:Fumarase_C_C	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N
InterPro:Fumarate_lyase_fam	GO:GO:0003674	GO:GO:0003824	GO:GO:0004333	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006099	GO:GO:0006106
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0045239
InterPro:IPR024083	UniProt:K4CVC2	InterPro:L-Aspartase-like	HAMAP:MF_00743	PFAM:PF00206	PFAM:PF10415
PRINTS:PR00149	ScanProsite:PS00163	PANTHER:PTHR11444	PANTHER:PTHR11444:SF1	SUPFAM:SSF48557	EnsemblPlantsGene:Solyc09g075450.2
EnsemblPlants:Solyc09g075450.2.1	TIGRFAMs:TIGR00979	UniParc:UPI000276BB5E	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:67147469..67156087

Molecular Weight (calculated)

53441.0 Da

IEP (calculated)

7.388

GRAVY (calculated)

-0.200

Length

494 amino acids

Sequence
(BLAST)

001: MAMLNAARRL SAGSALSDSL RYTSSSWRFF STSFREERDT FGPILVPSDK LWGAQTQRSL QNFEIGGDRE RMPEPIIRAF GIIKKCAAKV NMDYGLDQSI
101: GKAIMQAAEE VAEGKLNDHF PLVVWQTGSG TQSNMNANEV IANRAAEILG YNRGDKHVHP NDHVNKSQSS NDTFPTVMHI AAAMELNKRL VPNLKQLHTS
201: LNSKSVEFKD IIKIGRTHTQ DATPLTLGQE FSGYATQVKY GIDRVLGTLP RMYQLAQGGT AVGTGLNTKK GFDIKIAAAV AEETNLPFVT AENKFEALAA
301: HDAFAETSGA LNTVAASLMK IGNDIRFLGS GPRCGLGELS LPENEPGSSI MPGKVNPTQC EALTMVCAQV MGNHVAVTVG ASNGHFELNV FKPMIANALL
401: HSVRLLGDAS ASFEKNCVRD IQANRDRIAK LLHESLMLVT CLNPKIGYDN AAAVAKKAHK EGTSLKEAAL NLAVLTSEEF DQLVVPEKMI GPTD

Best Arabidopsis Sequence Match ( AT2G47510.1 )
(BLAST)

001: MSIYVASRRL SGGTTVTALR YATSLRSYST SFREERDTFG PIQVPSDKLW GAQTQRSLQN FEIGGERERM PEPIVRAFGV LKKCAAKVNM EYGLDPTIGK
101: AIMQAAQEVA EGKLNDHFPL VVWQTGSGTQ SNMNANEVIA NRAAEILGRK RGEKCVHPND HVNRSQSSND TFPTVMHIAA ATEINSRLIP SLKTLHSTLE
201: SKSFEFKDIV KIGRTHTQDA TPLTLGQEFG GYATQVKYGL NRVTCTLPRL YQLAQGGTAV GTGLNTKKGF DVKIAAAVAE ETNLPFVTAE NKFEALAAHD
301: ACVETSGSLN TIATSLMKIA NDIRFLGSGP RCGLGELVLP ENEPGSSIMP GKVNPTQCEA LTMVCAQVMG NHVAVTVGGS NGHFELNVFK PVIASALLHS
401: VRLIADASAS FEKNCVRGIE ANRERISKLL HESLMLVTSL NPKIGYDNAA AVAKKAHKEG CTLKEAALNL GVLTAEEFDT LVVPEKMIGP SD

Arabidopsis Description

FUM1FUM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMD4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.