CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67328	Canola	mitochondrion	7.42	10.56
CDY57717	Canola	mitochondrion	6.11	2.9
CDX80112	Canola	mitochondrion	6.11	2.87
CDY27481	Canola	mitochondrion	4.8	2.26
Solyc09g075450.2.1	Tomato	plastid	3.93	1.82
CDY63850	Canola	cytosol	0.87	1.02
CDY51427	Canola	cytosol	1.31	0.84
CDY53744	Canola	cytosol, nucleus, peroxisome	0.44	0.43
CDY53742	Canola	cytosol, peroxisome, plastid	0.44	0.23
CDY57716	Canola	nucleus	0.0	0.0
KRH30057	Soybean	cytosol	0.0	0.0
Solyc06g009830.2.1	Tomato	cytosol, mitochondrion, peroxisome	0.0	0.0

Protein Annotations

KEGG:00020+4.2.1.2	KEGG:00620+4.2.1.2	KEGG:00720+4.2.1.2	Gene3D:1.10.275.10	MapMan:35.1	GO:A0A078IN72
UniProt:A0A078IN72	EnsemblPlants:CDY51426	ProteinID:CDY51426	ProteinID:CDY51426.1	InterPro:Fum_hydII	InterPro:Fumarase/histidase_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0004333	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006106	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0045239	EnsemblPlantsGene:GSBRNA2T00003366001	InterPro:IPR024083	PANTHER:PTHR11444	PANTHER:PTHR11444:SF1
TMHMM:TMhelix	UniParc:UPI0004EEA212	SEG:seg	:	:	:

Description

BnaA04g27030DBnaA04g27030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IN72]

Coordinates

chrLK032993:+:60995..62589

Molecular Weight (calculated)

25743.8 Da

IEP (calculated)

11.046

GRAVY (calculated)

-0.086

Length

229 amino acids

Sequence
(BLAST)

001: MRKKKLVRLE MVRRSLRMRA DIRIMKHLAN IKGSVICMRG LYPYRHGSSL EIGRFSFFFG RFISQYEDHK LSGVDSSSAD TRNESGSVDD VNARDVAVGC
101: SIAKLFALLK FWIYLLIINK KKKSILTALS LISPSVISKL STTSVPTMAI NVASRRLSSG TALRRAMRSY STFREERDTF GPIQRERMPE PIVRAFGVLK
201: KCAAKVNMEY GLDPTIGKAI MQAAQEVAL

Best Arabidopsis Sequence Match ( AT2G47510.1 )
(BLAST)

001: MSIYVASRRL SGGTTVTALR YATSLRSYST SFREERDTFG PIQVPSDKLW GAQTQRSLQN FEIGGERERM PEPIVRAFGV LKKCAAKVNM EYGLDPTIGK
101: AIMQAAQEVA EGKLNDHFPL VVWQTGSGTQ SNMNANEVIA NRAAEILGRK RGEKCVHPND HVNRSQSSND TFPTVMHIAA ATEINSRLIP SLKTLHSTLE
201: SKSFEFKDIV KIGRTHTQDA TPLTLGQEFG GYATQVKYGL NRVTCTLPRL YQLAQGGTAV GTGLNTKKGF DVKIAAAVAE ETNLPFVTAE NKFEALAAHD
301: ACVETSGSLN TIATSLMKIA NDIRFLGSGP RCGLGELVLP ENEPGSSIMP GKVNPTQCEA LTMVCAQVMG NHVAVTVGGS NGHFELNVFK PVIASALLHS
401: VRLIADASAS FEKNCVRGIE ANRERISKLL HESLMLVTSL NPKIGYDNAA AVAKKAHKEG CTLKEAALNL GVLTAEEFDT LVVPEKMIGP SD

Arabidopsis Description

FUM1FUM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMD4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.