CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
peroxisome 1
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g01690.t01	Wine grape	mitochondrion	36.02	62.37
CDX80112	Canola	mitochondrion	49.69	16.43
CDY57717	Canola	mitochondrion	47.83	15.94
CDY27481	Canola	mitochondrion	39.75	13.14
KRH69266	Soybean	mitochondrion	38.51	12.53
KRH31845	Soybean	mitochondrion	40.99	11.83
KRH69267	Soybean	cytosol	27.95	9.68
CDY51426	Canola	mitochondrion	10.56	7.42
CDY53744	Canola	cytosol, nucleus, peroxisome	1.24	0.86
CDY51427	Canola	cytosol	0.62	0.28
CDY53742	Canola	cytosol, peroxisome, plastid	0.62	0.23
CDY57716	Canola	nucleus	0.0	0.0
CDY63850	Canola	cytosol	0.0	0.0
VIT_14s0060g01700.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

KEGG:00020+4.2.1.2	KEGG:00620+4.2.1.2	KEGG:00720+4.2.1.2	Gene3D:1.10.275.10	MapMan:35.1	GO:A0A078JIF6
UniProt:A0A078JIF6	EnsemblPlants:CDY67328	ProteinID:CDY67328	ProteinID:CDY67328.1	InterPro:Fum_hydII	InterPro:Fumarase/histidase_N
InterPro:Fumarate_lyase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0004333	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006106	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0045239	EnsemblPlantsGene:GSBRNA2T00062735001	InterPro:IPR024083	InterPro:L-Aspartase-like	PFAM:PF00206	PANTHER:PTHR11444
PANTHER:PTHR11444:SF1	SUPFAM:SSF48557	UniParc:UPI0004EE985F	SEG:seg	:	:

Description

BnaCnng54490DBnaCnng54490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIF6]

Coordinates

chrLK035983:-:65..881

Molecular Weight (calculated)

18735.7 Da

IEP (calculated)

11.061

GRAVY (calculated)

-0.476

Length

161 amino acids

Sequence
(BLAST)

001: MFLSNHRPGY LFYRPNTILF KIGPTKLSWF VESFLEYNNL PFCLPYLLQR RQSRNTPPSR LPRQKKNPMA IYVASRRLSA RTTAATLRYA TALRSYSTSF
101: REERDTFGPI QVPSDKLWGA QTQRSLQNFE IGGERERMPE PIVRAFGVLK KCAAKVHLLY S

Best Arabidopsis Sequence Match ( AT2G47510.1 )
(BLAST)

001: MSIYVASRRL SGGTTVTALR YATSLRSYST SFREERDTFG PIQVPSDKLW GAQTQRSLQN FEIGGERERM PEPIVRAFGV LKKCAAKVNM EYGLDPTIGK
101: AIMQAAQEVA EGKLNDHFPL VVWQTGSGTQ SNMNANEVIA NRAAEILGRK RGEKCVHPND HVNRSQSSND TFPTVMHIAA ATEINSRLIP SLKTLHSTLE
201: SKSFEFKDIV KIGRTHTQDA TPLTLGQEFG GYATQVKYGL NRVTCTLPRL YQLAQGGTAV GTGLNTKKGF DVKIAAAVAE ETNLPFVTAE NKFEALAAHD
301: ACVETSGSLN TIATSLMKIA NDIRFLGSGP RCGLGELVLP ENEPGSSIMP GKVNPTQCEA LTMVCAQVMG NHVAVTVGGS NGHFELNVFK PVIASALLHS
401: VRLIADASAS FEKNCVRGIE ANRERISKLL HESLMLVTSL NPKIGYDNAA AVAKKAHKEG CTLKEAALNL GVLTAEEFDT LVVPEKMIGP SD

Arabidopsis Description

FUM1FUM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMD4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.