CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021413.1-P	Field mustard	cytosol	74.54	79.08
CDY51427	Canola	cytosol	59.86	73.11
CDY63850	Canola	cytosol	29.36	64.97
AT2G47510.1	Thale cress	mitochondrion	67.66	59.96
CDY27481	Canola	mitochondrion	66.51	59.55
CDY57717	Canola	mitochondrion	63.3	57.14
CDX80112	Canola	mitochondrion	63.3	56.67
CDY53744	Canola	cytosol, nucleus, peroxisome	27.52	51.5
CDY57716	Canola	nucleus	4.36	19.0
CDY67328	Canola	mitochondrion	0.23	0.62
CDY51426	Canola	mitochondrion	0.23	0.44

Protein Annotations

KEGG:00020+4.2.1.2	KEGG:00620+4.2.1.2	KEGG:00720+4.2.1.2	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10
MapMan:2.3.7	GO:A0A078IUR2	UniProt:A0A078IUR2	EnsemblPlants:CDY53742	ProteinID:CDY53742	ProteinID:CDY53742.1
InterPro:Fum_hydII	InterPro:Fumarase/histidase_N	InterPro:Fumarase_C_C	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam
GO:GO:0003674	GO:GO:0003824	GO:GO:0004333	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006099	GO:GO:0006106	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016829	GO:GO:0045239	EnsemblPlantsGene:GSBRNA2T00011326001	InterPro:IPR024083	InterPro:L-Aspartase-like
PFAM:PF00206	PFAM:PF10415	PRINTS:PR00149	ScanProsite:PS00163	PANTHER:PTHR11444	PANTHER:PTHR11444:SF1
MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969
MetaCyc:PWY-7254	MetaCyc:PWY-7384	SUPFAM:SSF48557	UniPathway:UPA00223	UniParc:UPI0004EF3EBC	:

Description

BnaAnng12700DBnaAnng12700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUR2]

Coordinates

chrLK033233:-:15610..19895

Molecular Weight (calculated)

46892.4 Da

IEP (calculated)

7.569

GRAVY (calculated)

-0.057

Length

436 amino acids

Sequence
(BLAST)

001: MEYGLDPTIG KAIMQAAQEV AEGKLNDHFP LVIANRAAEI LGRQRGEKCV NRSQSSNDTF PTVSFFFQLL ALFVINSRLI PSLKTLHSTL DSKSLEFKDI
101: NSVAMLLISQ YGLNRVTCTL PRFYQLAQGG TAVGTGLNTK KGFDVKIAAA VAEETNLPFV TAENKFEALA AHDACVETSG SLANDIRFLG SGPRCGLGEL
201: VLPENEPGSS IMPGKVNPTQ CEALTMVCAQ VMGNHVAVTV GGSNGHFELN VFKPVIASAL LHIGIADASA SFEKNCVRGI EANRERISKL LHESLMLVTS
301: LNPKIGYDNA AAVAKKAYKE GSTLKGSAGG HLGPLFFYHH DHKHSGFQTN NNLRSMRSPP AAPTKSGFLC KVVLSTETQV LVSVTEENKL GEAAELASNT
401: ELSKGVVTLK KMVEWSEEEV KGVSRDSFVA ELLKRL

Best Arabidopsis Sequence Match ( AT2G47510.1 )
(BLAST)

001: MSIYVASRRL SGGTTVTALR YATSLRSYST SFREERDTFG PIQVPSDKLW GAQTQRSLQN FEIGGERERM PEPIVRAFGV LKKCAAKVNM EYGLDPTIGK
101: AIMQAAQEVA EGKLNDHFPL VVWQTGSGTQ SNMNANEVIA NRAAEILGRK RGEKCVHPND HVNRSQSSND TFPTVMHIAA ATEINSRLIP SLKTLHSTLE
201: SKSFEFKDIV KIGRTHTQDA TPLTLGQEFG GYATQVKYGL NRVTCTLPRL YQLAQGGTAV GTGLNTKKGF DVKIAAAVAE ETNLPFVTAE NKFEALAAHD
301: ACVETSGSLN TIATSLMKIA NDIRFLGSGP RCGLGELVLP ENEPGSSIMP GKVNPTQCEA LTMVCAQVMG NHVAVTVGGS NGHFELNVFK PVIASALLHS
401: VRLIADASAS FEKNCVRGIE ANRERISKLL HESLMLVTSL NPKIGYDNAA AVAKKAHKEG CTLKEAALNL GVLTAEEFDT LVVPEKMIGP SD

Arabidopsis Description

FUM1FUM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMD4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.