CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51427	Canola	cytosol	85.79	47.34
Zm00001d029088_P002	Maize	mitochondrion	41.62	44.81
Solyc06g009840.2.1	Tomato	plastid	34.01	40.61
CDY57717	Canola	mitochondrion	91.88	37.47
CDX80112	Canola	mitochondrion	91.88	37.17
CDY27481	Canola	mitochondrion	86.29	34.91
TraesCS4A01G137100.1	Wheat	mitochondrion	77.67	30.97
TraesCS4B01G167200.1	Wheat	golgi, unclear	77.67	30.97
TraesCS4D01G170200.1	Wheat	plastid	77.67	30.97
KXG39416	Sorghum	mitochondrion	78.17	30.92
Os03t0337900-01	Rice	mitochondrion	78.68	30.88
GSMUA_Achr11P...	Banana	mitochondrion	77.67	30.72
Zm00001d029084_P001	Maize	mitochondrion	77.67	30.72
CDY53742	Canola	cytosol, peroxisome, plastid	64.97	29.36
HORVU4Hr1G049590.3	Barley	plastid	77.16	28.46
CDY53744	Canola	cytosol, nucleus, peroxisome	21.83	18.45
CDY57716	Canola	nucleus	3.05	6.0
CDY51426	Canola	mitochondrion	1.02	0.87
CDY67328	Canola	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00020+4.2.1.2	KEGG:00620+4.2.1.2	KEGG:00720+4.2.1.2	Gene3D:1.10.40.30	Gene3D:1.20.200.10	MapMan:35.1
GO:A0A078JCQ5	UniProt:A0A078JCQ5	EnsemblPlants:CDY63850	ProteinID:CDY63850	ProteinID:CDY63850.1	InterPro:Fum_hydII
InterPro:Fumarase_C_C	InterPro:Fumarate_lyase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0004333	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099	GO:GO:0006106
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0045239	EnsemblPlantsGene:GSBRNA2T00039677001
InterPro:L-Aspartase-like	PFAM:PF00206	PFAM:PF10415	PANTHER:PTHR11444	PANTHER:PTHR11444:SF1	MetaCyc:PWY-5392
MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7254
MetaCyc:PWY-7384	SUPFAM:SSF48557	UniPathway:UPA00223	UniParc:UPI0004EDB91D	:	:

Description

BnaC04g51800DBnaC04g51800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCQ5]

Coordinates

chrLK034359:+:764..2517

Molecular Weight (calculated)

20845.2 Da

IEP (calculated)

7.838

GRAVY (calculated)

0.053

Length

197 amino acids

Sequence
(BLAST)

001: MDNLNARDVA VASRLIPLTL GQEVGGYATQ VKYGLYRVTC TLPRFYQLAQ GITAVGTGLN TKKGFDVKIA AAVAEETNLP FLTAENKFEA LGKVNPTQCE
101: ALTMVCAQVM GNHVAVTVGG SNASFEKNCD LKAIARVSYA CVTSLNPKIG YDNAAAVAKK AHKEGSTLKE AALKLGVLTS EEFDTLVVPE KMIGPSD

Best Arabidopsis Sequence Match ( AT2G47510.1 )
(BLAST)

001: MSIYVASRRL SGGTTVTALR YATSLRSYST SFREERDTFG PIQVPSDKLW GAQTQRSLQN FEIGGERERM PEPIVRAFGV LKKCAAKVNM EYGLDPTIGK
101: AIMQAAQEVA EGKLNDHFPL VVWQTGSGTQ SNMNANEVIA NRAAEILGRK RGEKCVHPND HVNRSQSSND TFPTVMHIAA ATEINSRLIP SLKTLHSTLE
201: SKSFEFKDIV KIGRTHTQDA TPLTLGQEFG GYATQVKYGL NRVTCTLPRL YQLAQGGTAV GTGLNTKKGF DVKIAAAVAE ETNLPFVTAE NKFEALAAHD
301: ACVETSGSLN TIATSLMKIA NDIRFLGSGP RCGLGELVLP ENEPGSSIMP GKVNPTQCEA LTMVCAQVMG NHVAVTVGGS NGHFELNVFK PVIASALLHS
401: VRLIADASAS FEKNCVRGIE ANRERISKLL HESLMLVTSL NPKIGYDNAA AVAKKAHKEG CTLKEAALNL GVLTAEEFDT LVVPEKMIGP SD

Arabidopsis Description

FUM1FUM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMD4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.