Factsheet for Os03t0337900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
mitochondrion: 23027867
plasma membrane: 27800704

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39416	Sorghum	mitochondrion	94.62	95.38
TraesCS4D01G170200.1	Wheat	plastid	93.03	94.53
TraesCS4B01G167200.1	Wheat	golgi, unclear	93.03	94.53
TraesCS4A01G137100.1	Wheat	mitochondrion	93.03	94.53
Zm00001d029084_P001	Maize	mitochondrion	92.43	93.17
Zm00001d029088_P002	Maize	mitochondrion	33.27	91.26
VIT_14s0060g01700.t01	Wine grape	cytosol	71.51	88.86
KRH69267	Soybean	cytosol	80.88	87.31
HORVU4Hr1G049590.3	Barley	plastid	92.63	87.08
GSMUA_Achr11P...	Banana	mitochondrion	85.06	85.74
VIT_07s0005g00880.t01	Wine grape	mitochondrion	84.06	85.43
AT2G47510.1	Thale cress	mitochondrion	82.27	83.94
Bra004450.1-P	Field mustard	mitochondrion	78.09	83.76
KRH69266	Soybean	mitochondrion	82.07	83.23
CDY63850	Canola	cytosol	30.88	78.68
AT5G50950.1	Thale cress	cytosol	76.89	75.69
KRH31845	Soybean	mitochondrion	82.27	74.01
Solyc06g009840.2.1	Tomato	plastid	22.31	67.88
Bra021400.1-P	Field mustard	mitochondrion	69.32	56.96
Bra021413.1-P	Field mustard	cytosol	44.22	54.01
VIT_14s0060g01690.t01	Wine grape	mitochondrion	9.16	49.46
KRH30057	Soybean	cytosol	6.77	41.98

Protein Annotations

KEGG:00020+4.2.1.2	KEGG:00620+4.2.1.2	KEGG:00720+4.2.1.2	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10
MapMan:2.3.7	EntrezGene:4332774	ProteinID:ABF95833.1	EMBL:AK243527	ProteinID:BAS84099.1	InterPro:Fum_hydII
InterPro:Fumarase/histidase_N	InterPro:Fumarase_C_C	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam	GO:GO:0003674
GO:GO:0003824	GO:GO:0004333	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006099	GO:GO:0006106	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016829	GO:GO:0045239	InterPro:IPR024083	InterPro:L-Aspartase-like	HAMAP:MF_00743	EnsemblPlantsGene:Os03g0337900
EnsemblPlants:Os03t0337900-01	PFAM:PF00206	PFAM:PF10415	PRINTS:PR00149	ScanProsite:PS00163	PANTHER:PTHR11444
PANTHER:PTHR11444:SF1	UniProt:Q10LR5	SUPFAM:SSF48557	SignalP:SignalP-noTM	TIGRFAMs:TIGR00979	UniParc:UPI0000DB422D
RefSeq:XP_015633139.1	SEG:seg	:	:	:	:

Description

Similar to predicted protein. (Os03t0337900-01)

Coordinates

chr3:-:12546003..12552195

Molecular Weight (calculated)

53685.6 Da

IEP (calculated)

7.415

GRAVY (calculated)

-0.105

Length

502 amino acids

Sequence
(BLAST)

001: MAMVLRRLAG ASAGGAPSPA AAAAAAALLL RPALARPIST GFREERDTFG PIRVPNDKLW GAQTQRSLQN FDIGGERERM PVPIIRAFGV LKKCAAKVNM
101: EYGLDPTIGK AIMQAAQEVA EGQLDDHFPL VIWQTGSGTQ SNMNANEVIA NRAAEILGHK RGEKFVHPND HVNRSQSSND TFPTVMHIAA ATEINSRFVP
201: SLQQLHKSLD SKSVEFQDII KIGRTHTQDA TPLTLGQEFS GYATQVKYGI DRIVCTLPRM YQLAQGGTAV GTGLNTKKGF DVKIAAAVAE ETELPFVTAE
301: NKFEALAAHD AFVESSGAVN TISASLMKIA NDIRLLGSGP RCGLGELILP ENEPGSSIMP GKVNPTQCEA LTMVCAQVMG NHVGVTVGGS NGHFELNVFK
401: PMIAAGLLRS LRLLGDASVS FEKNCVRGIQ ANHKRISQLL HESLMLVTSL NPKIGYDNAA AVAKKAHKEG STLKEAALDL GVLTESEFHE LVVPEKMIGP
501: SD

Best Arabidopsis Sequence Match ( AT2G47510.1 )
(BLAST)

001: MSIYVASRRL SGGTTVTALR YATSLRSYST SFREERDTFG PIQVPSDKLW GAQTQRSLQN FEIGGERERM PEPIVRAFGV LKKCAAKVNM EYGLDPTIGK
101: AIMQAAQEVA EGKLNDHFPL VVWQTGSGTQ SNMNANEVIA NRAAEILGRK RGEKCVHPND HVNRSQSSND TFPTVMHIAA ATEINSRLIP SLKTLHSTLE
201: SKSFEFKDIV KIGRTHTQDA TPLTLGQEFG GYATQVKYGL NRVTCTLPRL YQLAQGGTAV GTGLNTKKGF DVKIAAAVAE ETNLPFVTAE NKFEALAAHD
301: ACVETSGSLN TIATSLMKIA NDIRFLGSGP RCGLGELVLP ENEPGSSIMP GKVNPTQCEA LTMVCAQVMG NHVAVTVGGS NGHFELNVFK PVIASALLHS
401: VRLIADASAS FEKNCVRGIE ANRERISKLL HESLMLVTSL NPKIGYDNAA AVAKKAHKEG CTLKEAALNL GVLTAEEFDT LVVPEKMIGP SD

Arabidopsis Description

FUM1FUM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMD4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.