CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69267	Soybean	cytosol	89.49	95.27
AT2G47510.1	Thale cress	mitochondrion	87.68	88.21
Bra004450.1-P	Field mustard	mitochondrion	83.03	87.82
VIT_07s0005g00880.t01	Wine grape	mitochondrion	86.26	86.44
KRH31845	Soybean	mitochondrion	97.37	86.38
GSMUA_Achr11P...	Banana	mitochondrion	84.44	83.94
KXG39416	Sorghum	mitochondrion	83.84	83.33
TraesCS4B01G167200.1	Wheat	golgi, unclear	82.63	82.79
TraesCS4A01G137100.1	Wheat	mitochondrion	82.63	82.79
TraesCS4D01G170200.1	Wheat	plastid	82.42	82.59
Zm00001d029084_P001	Maize	mitochondrion	83.03	82.53
Os03t0337900-01	Rice	mitochondrion	83.23	82.07
Zm00001d029088_P002	Maize	mitochondrion	29.29	79.23
AT5G50950.1	Thale cress	cytosol	80.2	77.84
HORVU4Hr1G049590.3	Barley	plastid	82.42	76.4
Bra021400.1-P	Field mustard	mitochondrion	71.92	58.27
Bra021413.1-P	Field mustard	cytosol	46.46	55.96
KRH30057	Soybean	cytosol	7.47	45.68
CDY67328	Canola	mitochondrion	12.53	38.51
Zm00001d048743_P001	Maize	mitochondrion	21.21	37.5

Protein Annotations

KEGG:00020+4.2.1.2	KEGG:00620+4.2.1.2	KEGG:00720+4.2.1.2	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10
EntrezGene:100810850	MapMan:2.3.7	UniProt:A0A0R4J2N2	EMBL:ACUP02000698	InterPro:Fum_hydII	InterPro:Fumarase/histidase_N
InterPro:Fumarase_C_C	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam	EnsemblPlantsGene:GLYMA_02G015700	GO:GO:0003674
GO:GO:0003824	GO:GO:0004333	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006099	GO:GO:0006106	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016829	GO:GO:0045239	InterPro:IPR024083	EnsemblPlants:KRH69266	ProteinID:KRH69266	ProteinID:KRH69266.1
InterPro:L-Aspartase-like	HAMAP:MF_00743	PFAM:PF00206	PFAM:PF10415	PRINTS:PR00149	ScanProsite:PS00163
PANTHER:PTHR11444	PANTHER:PTHR11444:SF1	MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913
MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7254	MetaCyc:PWY-7384	SUPFAM:SSF48557	TIGRFAMs:TIGR00979
UniParc:UPI0001890B02	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:1410710..1416101

Molecular Weight (calculated)

53293.2 Da

IEP (calculated)

8.653

GRAVY (calculated)

-0.128

Length

495 amino acids

Sequence
(BLAST)

001: MALYVLSRRL SAGSNSTTLL ALRFVSSTRS YSSSFREERD TFGAIQVPSE KLWGAQTQRS LQNFDIGGPR ERMPEPIIRA FGVLKKCAAK VNMEYGLDPA
101: VGKAIMQAAQ EVAEGKLNDH FPLVVWQTGS GTQSNMNANE VIANRAAEIL WHKRGGKLVH PNDHVNRSQS SNDTFPTVMH IAAAMEINSR LIPSLKTLHG
201: TLNSKSIEFK DIVKIGRTHT QDATPLTLGQ EFSGYTTQVK YGIDRVIGTL PHMYQLAQGG TAVGTGLNTK KGFDAKIAAA VAEETNLPFV TAENKFEALA
301: AHDAFVETSG ALNTIAASLM KIANDIRLLG SGPRCGLGEL ILPENEPGSS IMPGKVNPTQ CEALTMVCAQ VIGNHVAVTV GGSNGHFELN VFKPMIASCL
401: LHSLRLLGDS SASFEKNCVR GIQANRERIS KLLHESLMLV TSLNPKIGYD KAAAVAKTAH KEGCTLKEAA LKLGVLSSED FDKLVVPEKM LGPSD

Best Arabidopsis Sequence Match ( AT2G47510.1 )
(BLAST)

001: MSIYVASRRL SGGTTVTALR YATSLRSYST SFREERDTFG PIQVPSDKLW GAQTQRSLQN FEIGGERERM PEPIVRAFGV LKKCAAKVNM EYGLDPTIGK
101: AIMQAAQEVA EGKLNDHFPL VVWQTGSGTQ SNMNANEVIA NRAAEILGRK RGEKCVHPND HVNRSQSSND TFPTVMHIAA ATEINSRLIP SLKTLHSTLE
201: SKSFEFKDIV KIGRTHTQDA TPLTLGQEFG GYATQVKYGL NRVTCTLPRL YQLAQGGTAV GTGLNTKKGF DVKIAAAVAE ETNLPFVTAE NKFEALAAHD
301: ACVETSGSLN TIATSLMKIA NDIRFLGSGP RCGLGELVLP ENEPGSSIMP GKVNPTQCEA LTMVCAQVMG NHVAVTVGGS NGHFELNVFK PVIASALLHS
401: VRLIADASAS FEKNCVRGIE ANRERISKLL HESLMLVTSL NPKIGYDNAA AVAKKAHKEG CTLKEAALNL GVLTAEEFDT LVVPEKMIGP SD

Arabidopsis Description

FUM1FUM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMD4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.