Factsheet for Zm00001d029084_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

mitochondrion: 22607058
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 22607058 doi

D Dahal, BP Mooney, KJ Newton

Division of Biological Sciences, University of Missouri, Columbia, MO 65211, USA.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39416	Sorghum	mitochondrion	97.39	97.39
TraesCS4B01G167200.1	Wheat	golgi, unclear	92.77	93.52
TraesCS4A01G137100.1	Wheat	mitochondrion	92.77	93.52
TraesCS4D01G170200.1	Wheat	plastid	92.57	93.32
Zm00001d029088_P002	Maize	mitochondrion	34.14	92.9
Os03t0337900-01	Rice	mitochondrion	93.17	92.43
VIT_14s0060g01700.t01	Wine grape	cytosol	71.49	88.12
KRH69267	Soybean	cytosol	81.12	86.88
HORVU4Hr1G049590.3	Barley	plastid	92.37	86.14
GSMUA_Achr11P...	Banana	mitochondrion	85.74	85.74
VIT_07s0005g00880.t01	Wine grape	mitochondrion	83.94	84.62
KRH69266	Soybean	mitochondrion	82.53	83.03
AT2G47510.1	Thale cress	mitochondrion	81.73	82.72
Bra004450.1-P	Field mustard	mitochondrion	77.11	82.05
CDY63850	Canola	cytosol	30.72	77.67
AT5G50950.1	Thale cress	cytosol	76.71	74.9
KRH31845	Soybean	mitochondrion	82.33	73.48
Solyc06g009840.2.1	Tomato	plastid	22.29	67.27
Bra021400.1-P	Field mustard	mitochondrion	68.07	55.48
VIT_14s0060g01690.t01	Wine grape	mitochondrion	9.84	52.69
Bra021413.1-P	Field mustard	cytosol	42.97	52.07
Zm00001d048743_P001	Maize	mitochondrion	25.1	44.64
KRH30057	Soybean	cytosol	6.43	39.51

Protein Annotations

KEGG:00020+4.2.1.2	KEGG:00620+4.2.1.2	KEGG:00720+4.2.1.2	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10
EntrezGene:100279871	MapMan:2.3.7	EMBL:BT066275	UniProt:C0PDA6	InterPro:Fum_hydII	InterPro:Fumarase/histidase_N
InterPro:Fumarase_C_C	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam	GO:GO:0003674	GO:GO:0003824
GO:GO:0004333	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006099	GO:GO:0006106	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829
GO:GO:0045239	InterPro:IPR024083	InterPro:L-Aspartase-like	HAMAP:MF_00743	ProteinID:ONL97841.1	PFAM:PF00206
PFAM:PF10415	PRINTS:PR00149	ScanProsite:PS00163	PANTHER:PTHR11444	PANTHER:PTHR11444:SF1	SUPFAM:SSF48557
TIGRFAMs:TIGR00979	UniParc:UPI0001890B05	EnsemblPlantsGene:Zm00001d029084	EnsemblPlants:Zm00001d029084_P001	EnsemblPlants:Zm00001d029084_T001	SEG:seg

Description

Fumarate hydratase 1 mitochondrial

Coordinates

chr1:+:57446546..57452595

Molecular Weight (calculated)

53587.4 Da

IEP (calculated)

7.462

GRAVY (calculated)

-0.148

Length

498 amino acids

Sequence
(BLAST)

001: MAMALRRLAG VSGSPSASSA AATVLLRSAL TRPISTGFRE ERDTFGPIQV PNDKLWGAQT QRSLQNFDIG GERERMPVPI IRAFGVLKKC AAKVNMDYGL
101: DPTIGKAIIQ AAEEVAEGKL DDHFPLVIWQ TGSGTQSNMN ANEVIANRAS EILGHKRGEK FVHPNDHVNR SQSSNDTFPT VMHIATAVEI HSRFIPSLQQ
201: LHDSLHSKTI EFKDIIKIGR THTQDATPLT LGQEFSGYTT QVKYGIDRIN CTLPRMYQLA QGGTAVGTGL NTKKGFDAKI AAAVAEETNL PFVTAENKFE
301: ALAAHDAFVE SSGAVNTISA SLMKIANDIR LLGSGPRCGL GELILPENEP GSSIMPGKVN PTQCEALTMV CAQVMGNHVG VTIGGANGHF ELNVFKPMIA
401: AGLLRSLRLL GDASVSFEKN CVRGIQANHK RISQLLHESL MLVTSLNPKI GYDNAAAVAK KAHKEGTTLK EAALDLGVLT EQEFHELVVP EKMIGPSD

Best Arabidopsis Sequence Match ( AT2G47510.1 )
(BLAST)

001: MSIYVASRRL SGGTTVTALR YATSLRSYST SFREERDTFG PIQVPSDKLW GAQTQRSLQN FEIGGERERM PEPIVRAFGV LKKCAAKVNM EYGLDPTIGK
101: AIMQAAQEVA EGKLNDHFPL VVWQTGSGTQ SNMNANEVIA NRAAEILGRK RGEKCVHPND HVNRSQSSND TFPTVMHIAA ATEINSRLIP SLKTLHSTLE
201: SKSFEFKDIV KIGRTHTQDA TPLTLGQEFG GYATQVKYGL NRVTCTLPRL YQLAQGGTAV GTGLNTKKGF DVKIAAAVAE ETNLPFVTAE NKFEALAAHD
301: ACVETSGSLN TIATSLMKIA NDIRFLGSGP RCGLGELVLP ENEPGSSIMP GKVNPTQCEA LTMVCAQVMG NHVAVTVGGS NGHFELNVFK PVIASALLHS
401: VRLIADASAS FEKNCVRGIE ANRERISKLL HESLMLVTSL NPKIGYDNAA AVAKKAHKEG CTLKEAALNL GVLTAEEFDT LVVPEKMIGP SD

Arabidopsis Description

FUM1FUM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMD4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.