Factsheet for TraesCS4D01G170200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 16595579
mitochondrion: 21043471
plastid: 22160430
plastid: 22736107

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G167200.1	Wheat	golgi, unclear	99.6	99.6
TraesCS4A01G137100.1	Wheat	mitochondrion	99.6	99.6
KXG39416	Sorghum	mitochondrion	94.74	93.98
Os03t0337900-01	Rice	mitochondrion	94.53	93.03
Zm00001d029084_P001	Maize	mitochondrion	93.32	92.57
HORVU4Hr1G049590.3	Barley	plastid	99.19	91.76
VIT_14s0060g01700.t01	Wine grape	cytosol	73.08	89.36
Zm00001d029088_P002	Maize	mitochondrion	33.0	89.07
KRH69267	Soybean	cytosol	81.38	86.45
GSMUA_Achr11P...	Banana	mitochondrion	86.64	85.94
VIT_07s0005g00880.t01	Wine grape	mitochondrion	84.62	84.62
AT2G47510.1	Thale cress	mitochondrion	83.0	83.33
Bra004450.1-P	Field mustard	mitochondrion	78.34	82.69
KRH69266	Soybean	mitochondrion	82.59	82.42
CDY63850	Canola	cytosol	30.97	77.67
AT5G50950.1	Thale cress	cytosol	78.14	75.69
KRH31845	Soybean	mitochondrion	82.59	73.12
Solyc06g009840.2.1	Tomato	plastid	22.06	66.06
Bra021400.1-P	Field mustard	mitochondrion	69.84	56.46
Bra021413.1-P	Field mustard	cytosol	44.74	53.77
VIT_14s0060g01690.t01	Wine grape	mitochondrion	9.51	50.54
KRH30057	Soybean	cytosol	6.48	39.51

Protein Annotations

KEGG:00020+4.2.1.2	KEGG:00620+4.2.1.2	KEGG:00720+4.2.1.2	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10
MapMan:2.3.7	InterPro:Fum_hydII	InterPro:Fumarase/histidase_N	InterPro:Fumarase_C_C	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N
InterPro:Fumarate_lyase_fam	GO:GO:0003674	GO:GO:0003824	GO:GO:0004333	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099	GO:GO:0006106	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0045239	InterPro:IPR024083	InterPro:L-Aspartase-like
HAMAP:MF_00743	PFAM:PF00206	PFAM:PF10415	PRINTS:PR00149	ScanProsite:PS00163	PANTHER:PTHR11444
PANTHER:PTHR11444:SF1	SUPFAM:SSF48557	TIGRFAMs:TIGR00979	EnsemblPlantsGene:TraesCS4D01G170200	EnsemblPlants:TraesCS4D01G170200.1	TIGR:cd01362
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:295569907..295577611

Molecular Weight (calculated)

53235.2 Da

IEP (calculated)

7.680

GRAVY (calculated)

-0.159

Length

494 amino acids

Sequence
(BLAST)

001: MAMVLRRLAG ASGSPSAAAL LLRPALTRPI STGFREERDT FGPIRVPNDK LWGAQTQRSL QNFDIGGERE RMPVPIIRAF GVLKKCAAKV NMEYGLDPTI
101: GKAIMQAAEE VAEGKLDDHF PLVIWQTGSG TQSNMNANEV IANRAAEILG HKRGDKFVHP NDHVNRSQSS NDTFPTVMHI AAAVEINSRF IPSLEQLHKS
201: LHSKSDEFKD IIKIGRTHTQ DATPLTLGQE FSGYATQVKY GIDRIACTLP RMYQLAQGGT AVGTGLNTKK GFDVKIAAAV AEETELPFVT AENKFEALAA
301: HDAFVESSGA VNTISASLMK IANDIRLLGS GPRCGLGELI LPENEPGSSI MPGKVNPTQC EALTMVCAQV MGNHVGVTIG GSNGHFELNV YKPMIAAGLL
401: RSLRLLGDAS VSFEKNCVRG IEANHKRISQ LLHESLMLVT SLNPKIGYDN AAAVAKKAHK EGTTLKESAL SLGVLTEKEF HELVVPEKMI GPSD

Best Arabidopsis Sequence Match ( AT2G47510.1 )
(BLAST)

001: MSIYVASRRL SGGTTVTALR YATSLRSYST SFREERDTFG PIQVPSDKLW GAQTQRSLQN FEIGGERERM PEPIVRAFGV LKKCAAKVNM EYGLDPTIGK
101: AIMQAAQEVA EGKLNDHFPL VVWQTGSGTQ SNMNANEVIA NRAAEILGRK RGEKCVHPND HVNRSQSSND TFPTVMHIAA ATEINSRLIP SLKTLHSTLE
201: SKSFEFKDIV KIGRTHTQDA TPLTLGQEFG GYATQVKYGL NRVTCTLPRL YQLAQGGTAV GTGLNTKKGF DVKIAAAVAE ETNLPFVTAE NKFEALAAHD
301: ACVETSGSLN TIATSLMKIA NDIRFLGSGP RCGLGELVLP ENEPGSSIMP GKVNPTQCEA LTMVCAQVMG NHVAVTVGGS NGHFELNVFK PVIASALLHS
401: VRLIADASAS FEKNCVRGIE ANRERISKLL HESLMLVTSL NPKIGYDNAA AVAKKAHKEG CTLKEAALNL GVLTAEEFDT LVVPEKMIGP SD

Arabidopsis Description

FUM1FUM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMD4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.