CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69266	Soybean	mitochondrion	86.38	97.37
KRH69267	Soybean	cytosol	79.03	94.84
AT2G47510.1	Thale cress	mitochondrion	77.96	88.41
Bra004450.1-P	Field mustard	mitochondrion	73.84	88.03
VIT_07s0005g00880.t01	Wine grape	mitochondrion	76.34	86.23
GSMUA_Achr11P...	Banana	mitochondrion	74.91	83.94
KXG39416	Sorghum	mitochondrion	74.37	83.33
TraesCS4B01G167200.1	Wheat	golgi, unclear	73.3	82.79
TraesCS4A01G137100.1	Wheat	mitochondrion	73.3	82.79
TraesCS4D01G170200.1	Wheat	plastid	73.12	82.59
Zm00001d029084_P001	Maize	mitochondrion	73.48	82.33
Os03t0337900-01	Rice	mitochondrion	74.01	82.27
Zm00001d029088_P002	Maize	mitochondrion	26.16	79.78
AT5G50950.1	Thale cress	cytosol	71.33	78.04
HORVU4Hr1G049590.3	Barley	plastid	73.66	76.97
Bra021400.1-P	Field mustard	mitochondrion	64.52	58.92
Bra021413.1-P	Field mustard	cytosol	40.86	55.47
KRH30057	Soybean	cytosol	6.63	45.68
CDY67328	Canola	mitochondrion	11.83	40.99
Zm00001d048743_P001	Maize	mitochondrion	19.0	37.86

Protein Annotations

KEGG:00020+4.2.1.2	KEGG:00620+4.2.1.2	KEGG:00720+4.2.1.2	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10
MapMan:2.3.7	EMBL:ACUP02006088	InterPro:Fum_hydII	InterPro:Fumarase/histidase_N	InterPro:Fumarase_C_C	InterPro:Fumarate_lyase_CS
InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam	EnsemblPlantsGene:GLYMA_10G016200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004333
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091
GO:GO:0006099	GO:GO:0006106	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016829	GO:GO:0045239	InterPro:IPR024083	UniProt:K7LGW1
EnsemblPlants:KRH31845	ProteinID:KRH31845	ProteinID:KRH31845.1	InterPro:L-Aspartase-like	HAMAP:MF_00743	PFAM:PF00206
PFAM:PF10415	PRINTS:PR00149	ScanProsite:PS00163	PANTHER:PTHR11444	PANTHER:PTHR11444:SF1	MetaCyc:PWY-5392
MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7254
MetaCyc:PWY-7384	SUPFAM:SSF48557	TIGRFAMs:TIGR00979	TMHMM:TMhelix	UniParc:UPI00023C93D9	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:1458517..1465495

Molecular Weight (calculated)

60461.2 Da

IEP (calculated)

9.715

GRAVY (calculated)

-0.079

Length

558 amino acids

Sequence
(BLAST)

001: MKKSHSCGPF KCFSWTRTKV IVRLQLGRRL RNRVSLLGTY FGSIVLVIGQ TSVILRWLLP SFAMAFYVLS RRLSAGSNST TLLALRFASS SRSFSSSFRE
101: ERDTFGPIQV PSDKLWGAQT QRSLQNFDIG GPRERMPEPI IRAFGVLKKC AAKVNMEYGL DPIVGEAIMQ AAQEVAEGKL NEHFPLVVWQ TGSGTQSNMN
201: ANEVIANRAA EILGHKRGGK FVHPNDHVNR SQSSNDTFPT VMHIAATMEI NSRLIPSLKT LHGTLNSKSI EFKDIVKIGR THTQDATPLT LGQEFSGYTT
301: QVKYGIDRVI GTLPHLYQLA QGGTAVGTGL NTKKGFDAKI AAAVAEETNL PFVTAENKFE ALAAHDAFVE TSGALNTIAA SLMKIANDIR LLGSGPRCGL
401: GELILPENEP GSSIMPGKVN PTQCEALTMV CAQVIGNHVA VTVGGSNGHF ELNVFKPMIA SCLLHSLRLL GDSSASFEKN CVRGIQANRE RISKLLHESL
501: MLVTSLNPKI GYDKAAAVAK TAHKEGCTLK EAALKLGVLS SEDFDKLVVP EKMLGPSD

Best Arabidopsis Sequence Match ( AT2G47510.1 )
(BLAST)

001: MSIYVASRRL SGGTTVTALR YATSLRSYST SFREERDTFG PIQVPSDKLW GAQTQRSLQN FEIGGERERM PEPIVRAFGV LKKCAAKVNM EYGLDPTIGK
101: AIMQAAQEVA EGKLNDHFPL VVWQTGSGTQ SNMNANEVIA NRAAEILGRK RGEKCVHPND HVNRSQSSND TFPTVMHIAA ATEINSRLIP SLKTLHSTLE
201: SKSFEFKDIV KIGRTHTQDA TPLTLGQEFG GYATQVKYGL NRVTCTLPRL YQLAQGGTAV GTGLNTKKGF DVKIAAAVAE ETNLPFVTAE NKFEALAAHD
301: ACVETSGSLN TIATSLMKIA NDIRFLGSGP RCGLGELVLP ENEPGSSIMP GKVNPTQCEA LTMVCAQVMG NHVAVTVGGS NGHFELNVFK PVIASALLHS
401: VRLIADASAS FEKNCVRGIE ANRERISKLL HESLMLVTSL NPKIGYDNAA AVAKKAHKEG CTLKEAALNL GVLTAEEFDT LVVPEKMIGP SD

Arabidopsis Description

FUM1FUM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMD4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.