CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g009820.2.1	Tomato	cytosol, mitochondrion, peroxisome	36.91	58.5
CDY57717	Canola	mitochondrion	66.95	32.3
CDX80112	Canola	mitochondrion	66.52	31.83
CDY27481	Canola	mitochondrion	65.24	31.21
CDY51427	Canola	cytosol	46.78	30.53
Zm00001d048743_P001	Maize	mitochondrion	36.05	30.0
CDY53742	Canola	cytosol, peroxisome, plastid	51.5	27.52
CDY63850	Canola	cytosol	18.45	21.83
CDY57716	Canola	nucleus	4.29	10.0
CDY67328	Canola	mitochondrion	0.86	1.24
CDY51426	Canola	mitochondrion	0.43	0.44

Protein Annotations

KEGG:00020+4.2.1.2	KEGG:00620+4.2.1.2	KEGG:00720+4.2.1.2	Gene3D:1.10.275.10	Gene3D:1.20.200.10	MapMan:2.3.7
GO:A0A078IWI5	UniProt:A0A078IWI5	EnsemblPlants:CDY53744	ProteinID:CDY53744	ProteinID:CDY53744.1	InterPro:Fum_hydII
InterPro:Fumarase/histidase_N	InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam	GO:GO:0003674	GO:GO:0003824	GO:GO:0004333
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006106	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0045239	EnsemblPlantsGene:GSBRNA2T00011328001	InterPro:IPR024083	InterPro:L-Aspartase-like
PFAM:PF00206	PRINTS:PR00149	PANTHER:PTHR11444	SUPFAM:SSF48557	UniParc:UPI0004EF3F6B	SEG:seg

Description

BnaAnng12720DBnaAnng12720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWI5]

Coordinates

chrLK033233:-:22781..26370

Molecular Weight (calculated)

26066.7 Da

IEP (calculated)

9.405

GRAVY (calculated)

-0.047

Length

233 amino acids

Sequence
(BLAST)

001: MCVKETGDKS VNMEYGLDPT IGKAIMQAAE GKLNDHFPLV VWQTGSGTQS NMNANEVIAN RAAEILGRQR GEKCVNRSQS SNDTFPTVSF FFQLLALFVI
101: NSRLIPSLKT LHSTLDSKSL ELKDIVKIGR THTQDATPLT LGQEFGGGYA TQVKYGLNRV TCTLPRLYQW KKKKKERVCS CLLRFFLLLK NSNLLSLSVI
201: YSSVPLYAPT ESIFLCFVLN LILRSSYLLI TDE

Best Arabidopsis Sequence Match ( AT2G47510.1 )
(BLAST)

001: MSIYVASRRL SGGTTVTALR YATSLRSYST SFREERDTFG PIQVPSDKLW GAQTQRSLQN FEIGGERERM PEPIVRAFGV LKKCAAKVNM EYGLDPTIGK
101: AIMQAAQEVA EGKLNDHFPL VVWQTGSGTQ SNMNANEVIA NRAAEILGRK RGEKCVHPND HVNRSQSSND TFPTVMHIAA ATEINSRLIP SLKTLHSTLE
201: SKSFEFKDIV KIGRTHTQDA TPLTLGQEFG GYATQVKYGL NRVTCTLPRL YQLAQGGTAV GTGLNTKKGF DVKIAAAVAE ETNLPFVTAE NKFEALAAHD
301: ACVETSGSLN TIATSLMKIA NDIRFLGSGP RCGLGELVLP ENEPGSSIMP GKVNPTQCEA LTMVCAQVMG NHVAVTVGGS NGHFELNVFK PVIASALLHS
401: VRLIADASAS FEKNCVRGIE ANRERISKLL HESLMLVTSL NPKIGYDNAA AVAKKAHKEG CTLKEAALNL GVLTAEEFDT LVVPEKMIGP SD

Arabidopsis Description

FUM1FUM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMD4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.