Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g009830.2.1 | Tomato | cytosol, mitochondrion, peroxisome | 17.0 | 9.29 |
| CDY51427 | Canola | cytosol | 20.0 | 5.6 |
| CDY27481 | Canola | mitochondrion | 22.0 | 4.52 |
| CDY53742 | Canola | cytosol, peroxisome, plastid | 19.0 | 4.36 |
| CDY57717 | Canola | mitochondrion | 21.0 | 4.35 |
| CDX80112 | Canola | mitochondrion | 21.0 | 4.31 |
| CDY53744 | Canola | cytosol, nucleus, peroxisome | 10.0 | 4.29 |
| Solyc09g075450.2.1 | Tomato | plastid | 21.0 | 4.25 |
| CDY63850 | Canola | cytosol | 6.0 | 3.05 |
| CDY51426 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY67328 | Canola | mitochondrion | 0.0 | 0.0 |
| KRH30057 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY57716 | EnsemblPlantsGene:GSBRNA2T00022563001 | ProteinID:CDY57716 | ProteinID:CDY57716.1 | SEG:seg | UniParc:UPI0004EE7096 |
| UniProt:A0A078J4Z1 | MapMan:35.2 | : | : | : | : |
Description
BnaC04g51890DBnaC04g51890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4Z1]
Coordinates
chrLK033598:-:23051..23542
Molecular Weight (calculated)
11565.8 Da
IEP (calculated)
5.704
GRAVY (calculated)
-0.992
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MRRTEVELEE NELGENARVQ PQKDLGFTIS QHKHNSCSSS LSRQKNTLCV LPYLGRHILK DMRRTEVELE ENELGENARV QPQKESQMIT EEMKKGGLDI
001: MDTITENHLN MKVFNCHIEH PFPIEPPAEA ASPPPQPLKM TKEERKKLRT LRRVAKEMEK REMISQGRVE PQKSKVKMSN LMKVRASEAT QNPTKLEKEI
101: RTEAAEREQA HMDRNVARKL TPAEKREKKE RKLFGDPTTV VETIVSVYKI NKKLSDPKTR FKVRMNAKQN ILTGFSVMMD GMSVVVVEGK RKAINRYEKL
201: MLKRINWEEA EKKEDEEENG GNKCCLVWQG SVEKPSFHRF HVQECLTKSD AKKVFNDAGV AHYWDLALNY
101: RTEAAEREQA HMDRNVARKL TPAEKREKKE RKLFGDPTTV VETIVSVYKI NKKLSDPKTR FKVRMNAKQN ILTGFSVMMD GMSVVVVEGK RKAINRYEKL
201: MLKRINWEEA EKKEDEEENG GNKCCLVWQG SVEKPSFHRF HVQECLTKSD AKKVFNDAGV AHYWDLALNY
Arabidopsis Description
Pre-mRNA-splicing factor [Source:UniProtKB/TrEMBL;Acc:Q1PEF1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.