Factsheet for Solyc06g009830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

cytosol 2
mitochondrion 4
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51427	Canola	cytosol	84.7	43.42
VIT_14s0060g01700.t01	Wine grape	cytosol	83.61	37.87
Solyc09g075450.2.1	Tomato	plastid	88.52	32.79
AT2G47510.1	Thale cress	mitochondrion	85.25	31.71
VIT_07s0005g00880.t01	Wine grape	mitochondrion	85.25	31.58
Bra004450.1-P	Field mustard	mitochondrion	78.14	30.56
AT5G50950.1	Thale cress	cytosol	83.61	30.0
Bra021413.1-P	Field mustard	cytosol	66.67	29.68
Bra021400.1-P	Field mustard	mitochondrion	83.61	25.04
CDY57716	Canola	nucleus	9.29	17.0
KRH30057	Soybean	cytosol	1.64	3.7
Solyc06g009840.2.1	Tomato	plastid	3.28	3.64
Solyc06g009820.2.1	Tomato	cytosol, mitochondrion, peroxisome	2.19	2.72
CDY51426	Canola	mitochondrion	0.0	0.0
VIT_14s0060g01690.t01	Wine grape	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00020+4.2.1.2	KEGG:00620+4.2.1.2	KEGG:00720+4.2.1.2	Gene3D:1.20.200.10	MapMan:2.3.7	InterPro:Fum_hydII
InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam	GO:GO:0003674	GO:GO:0003824	GO:GO:0004333
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091
GO:GO:0006099	GO:GO:0006106	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0045239	UniProt:K4C412	InterPro:L-Aspartase-like	PFAM:PF00206	PRINTS:PR00149	ScanProsite:PS00163
PANTHER:PTHR11444	PANTHER:PTHR11444:SF1	SUPFAM:SSF48557	EnsemblPlantsGene:Solyc06g009830.2	EnsemblPlants:Solyc06g009830.2.1	UniParc:UPI000276709E

Description

No Description!

Coordinates

chr6:+:3870749..3874945

Molecular Weight (calculated)

19528.7 Da

IEP (calculated)

7.453

GRAVY (calculated)

0.066

Length

183 amino acids

Sequence
(BLAST)

001: MNHPSLSPLK RVHSAEFKDI IKIGRTHTQD ATPLTLAQEF SGYVTQVKYG INRVLCTLPR MYQLAQGGTA VGTGLNTKKG FDIKIAAAVA EETNLPFVTA
101: ENKFEALAAH DAFVETSGAL NTVAVSLMKI GNDIRFLGSG PRCGLGELIL PENEPGSSIM PGKVNPTQCE ALTMVCAQVT VLL

Best Arabidopsis Sequence Match ( AT2G47510.1 )
(BLAST)

001: MSIYVASRRL SGGTTVTALR YATSLRSYST SFREERDTFG PIQVPSDKLW GAQTQRSLQN FEIGGERERM PEPIVRAFGV LKKCAAKVNM EYGLDPTIGK
101: AIMQAAQEVA EGKLNDHFPL VVWQTGSGTQ SNMNANEVIA NRAAEILGRK RGEKCVHPND HVNRSQSSND TFPTVMHIAA ATEINSRLIP SLKTLHSTLE
201: SKSFEFKDIV KIGRTHTQDA TPLTLGQEFG GYATQVKYGL NRVTCTLPRL YQLAQGGTAV GTGLNTKKGF DVKIAAAVAE ETNLPFVTAE NKFEALAAHD
301: ACVETSGSLN TIATSLMKIA NDIRFLGSGP RCGLGELVLP ENEPGSSIMP GKVNPTQCEA LTMVCAQVMG NHVAVTVGGS NGHFELNVFK PVIASALLHS
401: VRLIADASAS FEKNCVRGIE ANRERISKLL HESLMLVTSL NPKIGYDNAA AVAKKAHKEG CTLKEAALNL GVLTAEEFDT LVVPEKMIGP SD

Arabidopsis Description

FUM1FUM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMD4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.