Factsheet for VIT_09s0002g07030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003550.1-P	Field mustard	extracellular	15.8	61.29
KRH23585	Soybean	extracellular, plasma membrane, vacuole	62.37	61.22
PGSC0003DMT400073695	Potato	cytosol	57.8	60.57
Solyc12g042760.1.1	Tomato	plasma membrane	60.08	60.33
CDY54307	Canola	extracellular	58.84	57.52
Bra003549.1-P	Field mustard	extracellular	58.63	56.74
AT1G80080.1	Thale cress	plasma membrane	58.42	56.65
CDY57686	Canola	extracellular	58.42	56.54
GSMUA_Achr7P24750_001	Banana	cytosol	51.14	51.25
TraesCS2A01G357100.1	Wheat	plasma membrane	44.91	44.54
HORVU2Hr1G086860.1	Barley	plasma membrane	45.53	44.42
TraesCS2B01G376300.1	Wheat	extracellular	45.11	44.38
TraesCS2D01G355900.1	Wheat	plasma membrane	44.7	43.88
Os01t0623000-00	Rice	plasma membrane	44.49	43.32
EES01095	Sorghum	extracellular, plasma membrane, vacuole	45.11	43.06
Zm00001d044182_P001	Maize	vacuole	44.49	42.29
VIT_12s0142g00620.t01	Wine grape	cytosol	29.94	33.72
VIT_01s0011g02800.t01	Wine grape	extracellular	28.69	28.57
VIT_07s0005g03750.t01	Wine grape	plasma membrane	26.4	27.31
VIT_09s0070g00390.t01	Wine grape	extracellular	15.8	16.59

Protein Annotations

EntrezGene:100259300	wikigene:100259300	MapMan:11.10.2.3.3	Gene3D:3.80.10.10	ProteinID:CCB59612	ProteinID:CCB59612.1
UniProt:F6HXE2	EMBL:FN596494	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR032675	EntrezGene:LOC100259300	wikigene:LOC100259300	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13855
PRINTS:PR00019	PFscan:PS51450	PANTHER:PTHR44325	SUPFAM:SSF52058	SignalP:SignalP-noTM	UniParc:UPI000210A22C
ArrayExpress:VIT_09s0002g07030	EnsemblPlantsGene:VIT_09s0002g07030	EnsemblPlants:VIT_09s0002g07030.t01	RefSeq:XP_002265327	RefSeq:XP_002265327.1	SEG:seg

Description

No Description!

Coordinates

chr9:+:6932919..6934406

Molecular Weight (calculated)

52151.3 Da

IEP (calculated)

7.366

GRAVY (calculated)

0.032

Length

481 amino acids

Sequence
(BLAST)

001: MALFALLCLP LAAPFTVIMS DSGAPSALVD GPQTGFSMTG NGARTDAREQ EAVYDIMKGT GNPWATDIQD VCRDRWHGIE CMPDKDNVYH VVSLSFGALS
101: DDTAFPTCDP LHSSISPSIT KLPHIRTLFF YRCFSYNPQP IPAFLGQLGS TLQTLVLREN GHVGPIPSEL GNLTRLTILD LHKNNLSGSI PVSLGRISGL
201: RSLDLSGNRL TGSIPGLTFP VLNVLDLNQN LLVGSIPTSL GTCYSLVKMD ISHNHLSGPI PDSIDGLKSL ILMDLSYNHL SGPLPTSLRS LNSLQALILK
301: GNSMGSTPIP TDAFDGMKDL MILILSNTNL HGPIPESLGR LPNLRVVHLD MNWLNGSIPV HFRDLKNLSE LRLNDNRLIG PVPFGREMVW RMKKKLRLYN
401: NSGLCFDASN GFGDEVLESG TRYCETPKPG LTRTVQHYSA INGDVGRRVK VSSAAAAAEP SLVAGLLQLT IHAMCILSLL R

Best Arabidopsis Sequence Match ( AT1G80080.1 )
(BLAST)

001: MARYEFFRQI FIVLSIVSPL VRSFTVITSD STAPSALIDG PQTGFTMTND GARTEPDEQD AVYDIMRATG NDWAAAIPDV CRGRWHGIEC MPDQDNVYHV
101: VSLSFGALSD DTAFPTCDPQ RSYVSESLTR LKHLKALFFY RCLGRAPQRI PAFLGRLGSS LQTLVLRENG FLGPIPDELG NLTNLKVLDL HKNHLNGSIP
201: LSFNRFSGLR SLDLSGNRLT GSIPGFVLPA LSVLDLNQNL LTGPVPPTLT SCGSLIKIDL SRNRVTGPIP ESINRLNQLV LLDLSYNRLS GPFPSSLQGL
301: NSLQALMLKG NTKFSTTIPE NAFKGLKNLM ILVLSNTNIQ GSIPKSLTRL NSLRVLHLEG NNLTGEIPLE FRDVKHLSEL RLNDNSLTGP VPFERDTVWR
401: MRRKLRLYNN AGLCVNRDSD LDDAFGSKSG STVRLCDAET SRPAPSGTVQ HLSREEDGAL PDGATDVSST SKSLGFSYLS AFFLVFPNFI FMLISS

Arabidopsis Description

TMMTMM [Source:UniProtKB/TrEMBL;Acc:A0A178WJY8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.