Factsheet for VIT_07s0005g03750.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026717	Potato	cytosol	52.47	57.68
Solyc09g072630.2.1	Tomato	extracellular	52.26	56.12
AT4G28560.1	Thale cress	extracellular, vacuole	48.6	50.22
Bra011040.1-P	Field mustard	extracellular, plasma membrane	47.31	49.89
CDY35199	Canola	extracellular, plasma membrane	47.1	49.66
CDY38378	Canola	extracellular	47.1	49.32
KRH32220	Soybean	extracellular, plasma membrane, vacuole	45.16	47.09
KRH19593	Soybean	extracellular, plasma membrane	41.94	45.56
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	44.52	44.81
Os06t0627500-01	Rice	extracellular	30.75	32.28
VIT_12s0142g00620.t01	Wine grape	cytosol	27.53	29.98
VIT_09s0002g07030.t01	Wine grape	plasma membrane	27.31	26.4
VIT_01s0011g02800.t01	Wine grape	extracellular	26.24	25.26
VIT_09s0070g00390.t01	Wine grape	extracellular	15.48	15.72

Protein Annotations

EntrezGene:100256658	wikigene:100256658	MapMan:11.10.2.3.3	Gene3D:3.80.10.10	UniProt:A5C2Z6	EMBL:AM480287
ProteinID:CAN83874	ProteinID:CAN83874.1	ProteinID:CCB60137	ProteinID:CCB60137.1	EMBL:FN596502	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0008150	GO:GO:0009653	GO:GO:0009856	GO:GO:0009860	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016049	GO:GO:0016324	GO:GO:0030154	GO:GO:0040007
InterPro:IPR001611	InterPro:IPR032675	EntrezGene:LOC100256658	wikigene:LOC100256658	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PFAM:PF13855	PANTHER:PTHR44325	PANTHER:PTHR44325:SF3	SUPFAM:SSF52058	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0001524D0B	ArrayExpress:VIT_07s0005g03750	EnsemblPlantsGene:VIT_07s0005g03750	EnsemblPlants:VIT_07s0005g03750.t01	RefSeq:XP_002272315	RefSeq:XP_002272315.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:6715566..6716963

Molecular Weight (calculated)

51185.7 Da

IEP (calculated)

5.940

GRAVY (calculated)

0.051

Length

465 amino acids

Sequence
(BLAST)

001: MALSSSVFVC GLGFLLTLIS SFAVSQSQLA LNSEEQDSVY QVLDSINSDF PWRSIFPDDL CSSAPHGVVC DYFSGDADNE TETPHITELN FGYVSDYSPN
101: PPCSPYSTLN PRIFSSFKYL RKLFFYKCFT QTNVSVPEIP DSFGSSLEEL VFVENPSLVG SLSSMIRNFT RLRRLVLTGT GVYGKIPDEV ANLTSLEELT
201: LSQNKFSGEL TLNLANLKEL KILDLSHNHF QGNVSDTIGR LSQLLKLDLS WNRFTGKIPE NIKHLQRLAF LDLSYNEFSS PGLPLFLGQM PMLREVYLSG
301: NKLGGQIPEI WEKLGGILGI GLSRMGLIGK IPASMGIFLR NVSYLGLDNN KLEGTVPEEF GFLEKVNELN LENNGLSGRL PFSSKFASRI GGKLRLKGNI
401: GLCVDEGQST LTFKGSRGSL GTLKICSKPD LPSPVLVHGG SSTIHLYCFY QLMLLGVLGF LFVLA

Best Arabidopsis Sequence Match ( AT4G28560.1 )
(BLAST)

001: MASFTNLSLL LLFLFTATLI TSQQSDDDEN ASPQLALDPS EQEAVYRVLD SVNSAISWRT IFPDDICASP PDGVVCDNLY ASQNGVATSV HVTEFHLGYL
101: SDYTQNPPCS SNATLDPLLF TAFKHLRKLF FYKCFTDARA SLPLTVPEDF GSVLEELVFI ENPSLVGEIG AMIGNFTKLR RLVLTGNGFH GSIPGQIGDL
201: VSLEEITLSR NSLTGGFPAN ATSRLKNLKV LDFSHNFING NAPDSIGDLT ELLKLDLSFN EFTGEVPSGV GNLKKLVFLD LSYNRFGNFG VPLFLAEMSS
301: LREVHLSGNK LGGRIPAIWK NLEGISGIGF SRMGLEGNIP ASMGSSLKNL CFLALDNNNL DGQIPEEFGF LDSAREINLE NNNLTGKAPF SDSFRDRIGK
401: KLKLSGNVNL QVKNSDPHLA GRALYSSARK VLPLIYFPAT LLALYISITQ

Arabidopsis Description

RIC7ROP-interactive CRIB motif-containing protein 7 [Source:UniProtKB/TrEMBL;Acc:F4JLB7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.