Factsheet for VIT_12s0142g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G42800.1	Thale cress	vacuole	62.76	58.01
Bra004719.1-P	Field mustard	extracellular, plasma membrane, vacuole	60.89	57.27
GSMUA_Achr4P15510_001	Banana	cytosol	56.21	56.74
PGSC0003DMT400054822	Potato	plasma membrane	59.95	56.26
CDX79853	Canola	extracellular, plasma membrane, vacuole	56.21	56.07
CDY50822	Canola	extracellular, plasma membrane, vacuole	55.97	55.84
Solyc10g007830.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	57.61	55.66
Zm00001d002194_P001	Maize	cytosol	15.46	40.0
VIT_09s0002g07030.t01	Wine grape	plasma membrane	33.72	29.94
TraesCS3D01G282900.1	Wheat	extracellular, plasma membrane	30.68	29.18
TraesCS3A01G282900.1	Wheat	extracellular, plasma membrane	30.45	28.82
TraesCS3B01G316600.1	Wheat	extracellular, plasma membrane	30.45	28.38
HORVU3Hr1G069160.1	Barley	extracellular, plasma membrane	30.21	28.17
VIT_07s0005g03750.t01	Wine grape	plasma membrane	29.98	27.53
TraesCS1B01G365000.1	Wheat	extracellular, vacuole	28.1	27.46
Os01t0729400-01	Rice	plasma membrane, vacuole	29.04	27.31
Zm00001d011757_P001	Maize	extracellular, plasma membrane	28.57	27.23
TraesCS1A01G350800.1	Wheat	extracellular, plasma membrane	27.87	27.23
TraesCS1D01G353700.1	Wheat	extracellular, vacuole	27.87	27.23
EES01405	Sorghum	extracellular, plasma membrane	29.27	26.37
Zm00001d038742_P001	Maize	mitochondrion	28.34	25.85
Os05t0530701-01	Rice	plasma membrane	28.34	25.69
Zm00001d010813_P001	Maize	mitochondrion	27.87	25.59
VIT_01s0011g02800.t01	Wine grape	extracellular	28.34	25.05
EES19861	Sorghum	plastid	27.63	24.89
HORVU1Hr1G081210.1	Barley	cytosol, peroxisome, plasma membrane	28.1	21.47
VIT_09s0070g00390.t01	Wine grape	extracellular	18.74	17.47

Protein Annotations

EntrezGene:100247105	wikigene:100247105	MapMan:11.10.2.3.3	Gene3D:3.80.10.10	UniProt:A5CBP2	EMBL:AM489220
ProteinID:CAN62290	ProteinID:CAN62290.1	ProteinID:CCB56409	ProteinID:CCB56409.1	EMBL:FN595999	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	EntrezGene:LOC100247105	wikigene:LOC100247105
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF13855	PRINTS:PR00019	PANTHER:PTHR45183
PANTHER:PTHR45183:SF3	SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI0001522BAD	ArrayExpress:VIT_12s0142g00620	EnsemblPlantsGene:VIT_12s0142g00620
EnsemblPlants:VIT_12s0142g00620.t01	RefSeq:XP_002280055	RefSeq:XP_002280055.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:561908..563202

Molecular Weight (calculated)

46561.3 Da

IEP (calculated)

8.166

GRAVY (calculated)

0.072

Length

427 amino acids

Sequence
(BLAST)

001: MDPSEAETLF NIMDSMSSDH TWRISFPNPC NSASSWPGIE CKPGQNDKLL HVSRLDFGSP PNPSCKTTAT FPSQVFTLPY LQSLFFFHCF TQTKTNISLP
101: LLSHPSNASS LQQLSLRSNP ALVGPIPSQI SSLHSLQILT LSQNRLAGRI PVQIFSLNSL VHLDLSYNLL TGPIPPQLGS LRNLVGLDLS YNSLSGSIPD
201: TIGQMGLLQK FDLSSNFLVG NIPDSIEKLN SLVFMALSSN RLGGKFPQGL AKLQSLQYFI MDDNPMFIPL PEEFGKLMKL QELRVANSGY SGTIPTSFSH
301: LTNLSTLSLQ NNRLTGEIPE GFGSLSHIYH LNLSRNMLAG IVPFNSIFLK RLGRNLDLSA NPGLCLSPSE AYGVKIGVNV CGTNRTVSTI QPFNKSEAPS
401: GLCKSLFLLC FILCTSVLAL HHISFSA

Best Arabidopsis Sequence Match ( AT2G42800.1 )
(BLAST)

001: MTMKRALPSP SSLLFFFLLI TPLFLCQENR VSASMPPSES ETLFKIMESM SSDQQWRQSH PNPCAPGSSW PGIECKTGPD HLSHVSRLDF GSAPNPSCKS
101: SASFPSSIFT LPFLQSVFFF NCFTHFPTTI MFPIKLIPNS SLQQLSLRSN PSLSGQIPPR ISSLKSLQIL TLSQNRLTGD IPPAIFSLKS LVHLDLSYNK
201: LTGKIPLQLG NLNNLVGLDL SYNSLTGTIP PTISQLGMLQ KLDLSSNSLF GRIPEGVEKL RSLSFMALSN NKLKGAFPKG ISNLQSLQYF IMDNNPMFVA
301: LPVELGFLPK LQELQLENSG YSGVIPESYT KLTNLSSLSL ANNRLTGEIP SGFESLPHVF HLNLSRNLLI GVVPFDSSFL RRLGKNLDLS GNRGLCLNPE
401: DEFSVVKTGV DVCGKNVSSG GGLSVHSSKK KSQASRYYRS CFFANALFPF ALFLGLHQRW VL

Arabidopsis Description

AtRLP29RLP29 [Source:UniProtKB/TrEMBL;Acc:A0A178VT48]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.