CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50822	Canola	extracellular, plasma membrane, vacuole	94.86	94.86
Bra004719.1-P	Field mustard	extracellular, plasma membrane, vacuole	98.13	92.51
AT2G42800.1	Thale cress	vacuole	76.64	71.0
VIT_12s0142g00620.t01	Wine grape	cytosol	56.07	56.21
Solyc10g007830.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	53.74	52.04
PGSC0003DMT400054822	Potato	plasma membrane	54.67	51.43
GSMUA_Achr4P15510_001	Banana	cytosol	48.83	49.41
Zm00001d002194_P001	Maize	cytosol	12.38	32.12
CDY35199	Canola	extracellular, plasma membrane	30.61	29.71
CDX95990	Canola	extracellular, vacuole	29.91	29.7
CDY57686	Canola	extracellular	33.64	28.97
CDY54307	Canola	extracellular	33.18	28.86
CDY33598	Canola	extracellular, golgi	28.97	28.77
CDY38378	Canola	extracellular	29.44	28.38
CDX83542	Canola	extracellular, plasma membrane, vacuole	31.07	28.12
CDX97999	Canola	extracellular	27.34	27.86
CDY13577	Canola	vacuole	30.61	27.64
CDY19386	Canola	cytosol	25.47	26.72
TraesCS3A01G282900.1	Wheat	extracellular, plasma membrane	26.4	25.06
TraesCS3D01G282900.1	Wheat	extracellular, plasma membrane	25.93	24.72
HORVU3Hr1G069160.1	Barley	extracellular, plasma membrane	26.4	24.67
Os01t0729400-01	Rice	plasma membrane, vacuole	25.93	24.45
CDY20429	Canola	cytosol	8.18	24.31
TraesCS1B01G365000.1	Wheat	extracellular, vacuole	24.77	24.26
Os05t0530701-01	Rice	plasma membrane	26.64	24.2
TraesCS1A01G350800.1	Wheat	extracellular, plasma membrane	24.53	24.03
Zm00001d011757_P001	Maize	extracellular, plasma membrane	25.0	23.88
TraesCS3B01G316600.1	Wheat	extracellular, plasma membrane	25.47	23.8
TraesCS1D01G353700.1	Wheat	extracellular, vacuole	24.3	23.8
EES01405	Sorghum	extracellular, plasma membrane	26.17	23.63
Zm00001d038742_P001	Maize	mitochondrion	25.23	23.08
EES19861	Sorghum	plastid	25.47	23.0
Zm00001d010813_P001	Maize	mitochondrion	24.53	22.58
HORVU1Hr1G081210.1	Barley	cytosol, peroxisome, plasma membrane	24.53	18.78

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX79853	ProteinID:CDX79853	ProteinID:CDX79853.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00132704001	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560	PFAM:PF13855	PRINTS:PR00019	PANTHER:PTHR45183
PANTHER:PTHR45183:SF3	SMART:SM00369	SUPFAM:SSF52058	SignalP:SignalP-noTM	UniParc:UPI0004EF4221	SEG:seg

Description

BnaA05g03030D

Coordinates

chrLK031819:-:516688..518052

Molecular Weight (calculated)

46530.7 Da

IEP (calculated)

9.164

GRAVY (calculated)

0.046

Length

428 amino acids

Sequence
(BLAST)

001: MKTKRALPSP TSLLFHLLIT PLFLCEANTV SMPPSESETL FTIMDSMSSD QQWRRSHPNP CAPGSSWPGI ECKTGPDRLP HVSRLDFGSA PNPSCKSSAS
101: FPHLIFSLPF LQSVFFFNCF THLPTTIIFP IKLLPNSSLQ QLSLRSNPSL SGQIPPLISS LTSLQILTLS QNKLTGAIPP VLFSLKNLLH LDLSYNKLTG
201: TIPLQLGNLN SLLGLDLSYN SLTGLIPHTI SQLGTLQKLD LSSNALSGAI PQGLEKLRSL SFIALSNNRL RGAFPKGLSK LESLQYFIMD NNPMHAPLPV
301: ELGLLPKLQE IQLENSGYSG VIPESYTRLM NLSSLSLADN KLTGEIPSGF LRRLGKNLDL SGNRGLCLNP EDEFSVVKTG VGVCGRNVTS GPSPKISQAS
401: TSRCCYGSCL LANALFQVVL FLGLRHHR

Best Arabidopsis Sequence Match ( AT2G42800.1 )
(BLAST)

001: MTMKRALPSP SSLLFFFLLI TPLFLCQENR VSASMPPSES ETLFKIMESM SSDQQWRQSH PNPCAPGSSW PGIECKTGPD HLSHVSRLDF GSAPNPSCKS
101: SASFPSSIFT LPFLQSVFFF NCFTHFPTTI MFPIKLIPNS SLQQLSLRSN PSLSGQIPPR ISSLKSLQIL TLSQNRLTGD IPPAIFSLKS LVHLDLSYNK
201: LTGKIPLQLG NLNNLVGLDL SYNSLTGTIP PTISQLGMLQ KLDLSSNSLF GRIPEGVEKL RSLSFMALSN NKLKGAFPKG ISNLQSLQYF IMDNNPMFVA
301: LPVELGFLPK LQELQLENSG YSGVIPESYT KLTNLSSLSL ANNRLTGEIP SGFESLPHVF HLNLSRNLLI GVVPFDSSFL RRLGKNLDLS GNRGLCLNPE
401: DEFSVVKTGV DVCGKNVSSG GGLSVHSSKK KSQASRYYRS CFFANALFPF ALFLGLHQRW VL

Arabidopsis Description

AtRLP29RLP29 [Source:UniProtKB/TrEMBL;Acc:A0A178VT48]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.