CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57686	Canola	extracellular	88.82	87.93
AT1G80080.1	Thale cress	plasma membrane	76.63	76.01
VIT_09s0002g07030.t01	Wine grape	plasma membrane	57.52	58.84
KRH23585	Soybean	extracellular, plasma membrane, vacuole	55.49	55.71
PGSC0003DMT400073695	Potato	cytosol	51.63	55.34
Solyc12g042760.1.1	Tomato	plasma membrane	53.86	55.32
GSMUA_Achr7P24750_001	Banana	cytosol	47.15	48.33
HORVU2Hr1G086860.1	Barley	plasma membrane	44.11	44.02
TraesCS2A01G357100.1	Wheat	plasma membrane	42.48	43.09
TraesCS2B01G376300.1	Wheat	extracellular	42.48	42.74
Os01t0623000-00	Rice	plasma membrane	42.48	42.31
TraesCS2D01G355900.1	Wheat	plasma membrane	42.07	42.24
EES01095	Sorghum	extracellular, plasma membrane, vacuole	43.09	42.06
Zm00001d044182_P001	Maize	vacuole	42.89	41.7
CDX79853	Canola	extracellular, plasma membrane, vacuole	28.86	33.18
CDY50822	Canola	extracellular, plasma membrane, vacuole	28.46	32.71
CDX95990	Canola	extracellular, vacuole	27.44	31.32
CDY20429	Canola	cytosol	9.15	31.25
CDY33598	Canola	extracellular, golgi	26.83	30.63
CDY35199	Canola	extracellular, plasma membrane	27.24	30.39
CDX97999	Canola	extracellular	25.81	30.24
CDY19386	Canola	cytosol	25.0	30.15
CDX83542	Canola	extracellular, plasma membrane, vacuole	28.25	29.39
CDY38378	Canola	extracellular	26.42	29.28
CDY13577	Canola	vacuole	28.05	29.11

Protein Annotations

MapMan:11.10.2.3.3	Gene3D:3.80.10.10	GO:A0A078IWD2	UniProt:A0A078IWD2	EnsemblPlants:CDY54307	ProteinID:CDY54307
ProteinID:CDY54307.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00013793001	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF13855	PRINTS:PR00019	PANTHER:PTHR44325	SMART:SM00369	SUPFAM:SSF52058
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EDB944	SEG:seg	:	:

Description

BnaC06g43050DBnaC06g43050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWD2]

Coordinates

chrLK033301:-:2837..4375

Molecular Weight (calculated)

53406.4 Da

IEP (calculated)

7.520

GRAVY (calculated)

0.047

Length

492 amino acids

Sequence
(BLAST)

001: MAHYGLYCHM LLVFSMICPF ISSFTVITSD AVAPSALIDG PQAGFTMTND GSHTEPDEQD AVYDIMRATG NDWAAAIPDV CRGRWHGIEC MPDQDNVYHV
101: VSLSFGALSD DTAFPTCDPK RSYISESLTR LKHLRALFFY RCLSRAPQLI PSFLGRLGSS LQTLVLRENG LFGSIPNELG NLTNLKVLDL HKNNLNGSIP
201: LSLNRLSGLR SLDLSVNRLT GSIPGLLLPD LNVLDLNHNL LTGPVPATLS TCGSLIKIDL SHNRVTGPIP DSINRLNQLV LLDLSYNRLS GPFPSSLQGL
301: NSLQALVLKG NTNFASAIPE NAFKGLKNLM ILVLSNMNLH GSIPGSLTRL TSLRVLHLEG NNLTGSIPME FRGVKDLSEL RLNDNRLTGP VPFERDIVWR
401: MRRKLRLYNN AGLCVNSESN LDDVFGSSVG LCEGETKRPG PSGTVQHLSG AGGGNVTADR ATYVSSGSKS LGFFGLSAFL VVFNFAYMLL SC

Best Arabidopsis Sequence Match ( AT1G80080.1 )
(BLAST)

001: MARYEFFRQI FIVLSIVSPL VRSFTVITSD STAPSALIDG PQTGFTMTND GARTEPDEQD AVYDIMRATG NDWAAAIPDV CRGRWHGIEC MPDQDNVYHV
101: VSLSFGALSD DTAFPTCDPQ RSYVSESLTR LKHLKALFFY RCLGRAPQRI PAFLGRLGSS LQTLVLRENG FLGPIPDELG NLTNLKVLDL HKNHLNGSIP
201: LSFNRFSGLR SLDLSGNRLT GSIPGFVLPA LSVLDLNQNL LTGPVPPTLT SCGSLIKIDL SRNRVTGPIP ESINRLNQLV LLDLSYNRLS GPFPSSLQGL
301: NSLQALMLKG NTKFSTTIPE NAFKGLKNLM ILVLSNTNIQ GSIPKSLTRL NSLRVLHLEG NNLTGEIPLE FRDVKHLSEL RLNDNSLTGP VPFERDTVWR
401: MRRKLRLYNN AGLCVNRDSD LDDAFGSKSG STVRLCDAET SRPAPSGTVQ HLSREEDGAL PDGATDVSST SKSLGFSYLS AFFLVFPNFI FMLISS

Arabidopsis Description

TMMTMM [Source:UniProtKB/TrEMBL;Acc:A0A178WJY8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.