Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54307 | Canola | extracellular | 76.01 | 76.63 |
| Bra003550.1-P | Field mustard | extracellular | 18.95 | 75.81 |
| Bra003549.1-P | Field mustard | extracellular | 74.19 | 74.04 |
| CDY57686 | Canola | extracellular | 74.19 | 74.04 |
| VIT_09s0002g07030.t01 | Wine grape | plasma membrane | 56.65 | 58.42 |
| Solyc12g042760.1.1 | Tomato | plasma membrane | 53.83 | 55.74 |
| PGSC0003DMT400073695 | Potato | cytosol | 51.01 | 55.12 |
| KRH23585 | Soybean | extracellular, plasma membrane, vacuole | 53.63 | 54.29 |
| GSMUA_Achr7P24750_001 | Banana | cytosol | 47.38 | 48.96 |
| TraesCS2D01G355900.1 | Wheat | plasma membrane | 42.14 | 42.65 |
| TraesCS2A01G357100.1 | Wheat | plasma membrane | 41.53 | 42.47 |
| TraesCS2B01G376300.1 | Wheat | extracellular | 41.73 | 42.33 |
| HORVU2Hr1G086860.1 | Barley | plasma membrane | 41.73 | 41.99 |
| Os01t0623000-00 | Rice | plasma membrane | 41.13 | 41.3 |
| EES01095 | Sorghum | extracellular, plasma membrane, vacuole | 41.94 | 41.27 |
| Zm00001d044182_P001 | Maize | vacuole | 41.33 | 40.51 |
| AT1G68780.1 | Thale cress | extracellular, golgi | 28.02 | 32.18 |
| AT2G42800.1 | Thale cress | vacuole | 28.43 | 30.52 |
| AT1G13230.1 | Thale cress | extracellular | 24.6 | 28.77 |
| AT3G25670.1 | Thale cress | extracellular | 27.22 | 28.42 |
| AT4G28560.1 | Thale cress | extracellular, vacuole | 24.8 | 27.33 |
Protein Annotations
| MapMan:11.10.2.3.3 | Gene3D:3.80.10.10 | EntrezGene:844348 | UniProt:A0A178WJY8 | ProteinID:AAD55468.1 | ProteinID:AEE36354.1 |
| EMBL:AK118563 | ArrayExpress:AT1G80080 | EnsemblPlantsGene:AT1G80080 | RefSeq:AT1G80080 | TAIR:AT1G80080 | RefSeq:AT1G80080-TAIR-G |
| EnsemblPlants:AT1G80080.1 | TAIR:AT1G80080.1 | EMBL:BT005892 | GO:GO:0002376 | GO:GO:0003674 | GO:GO:0004871 |
| GO:GO:0004872 | GO:GO:0005102 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008356 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0010090 | GO:GO:0010375 | GO:GO:0010376 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0030154 | GO:GO:0031225 | GO:GO:0033612 | GO:GO:0042277 | GO:GO:0045087 |
| GO:GO:0050832 | GO:GO:0071215 | GO:GO:1905034 | InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_typical-subtyp | RefSeq:NP_178125.1 | ProteinID:OAP17462.1 | PFAM:PF13855 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0002000 | PO:PO:0004504 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR00019 | PANTHER:PTHR44325 | UniProt:Q9SSD1 |
| SMART:SM00369 | SUPFAM:SSF52058 | SignalP:SignalP-noTM | Symbol:TMM | TMHMM:TMhelix | UniParc:UPI00000484BF |
Description
TMMTMM [Source:UniProtKB/TrEMBL;Acc:A0A178WJY8]
Coordinates
chr1:-:30127819..30129649
Molecular Weight (calculated)
54508.4 Da
IEP (calculated)
7.810
GRAVY (calculated)
-0.099
Length
496 amino acids
Sequence
(BLAST)
(BLAST)
001: MARYEFFRQI FIVLSIVSPL VRSFTVITSD STAPSALIDG PQTGFTMTND GARTEPDEQD AVYDIMRATG NDWAAAIPDV CRGRWHGIEC MPDQDNVYHV
101: VSLSFGALSD DTAFPTCDPQ RSYVSESLTR LKHLKALFFY RCLGRAPQRI PAFLGRLGSS LQTLVLRENG FLGPIPDELG NLTNLKVLDL HKNHLNGSIP
201: LSFNRFSGLR SLDLSGNRLT GSIPGFVLPA LSVLDLNQNL LTGPVPPTLT SCGSLIKIDL SRNRVTGPIP ESINRLNQLV LLDLSYNRLS GPFPSSLQGL
301: NSLQALMLKG NTKFSTTIPE NAFKGLKNLM ILVLSNTNIQ GSIPKSLTRL NSLRVLHLEG NNLTGEIPLE FRDVKHLSEL RLNDNSLTGP VPFERDTVWR
401: MRRKLRLYNN AGLCVNRDSD LDDAFGSKSG STVRLCDAET SRPAPSGTVQ HLSREEDGAL PDGATDVSST SKSLGFSYLS AFFLVFPNFI FMLISS
101: VSLSFGALSD DTAFPTCDPQ RSYVSESLTR LKHLKALFFY RCLGRAPQRI PAFLGRLGSS LQTLVLRENG FLGPIPDELG NLTNLKVLDL HKNHLNGSIP
201: LSFNRFSGLR SLDLSGNRLT GSIPGFVLPA LSVLDLNQNL LTGPVPPTLT SCGSLIKIDL SRNRVTGPIP ESINRLNQLV LLDLSYNRLS GPFPSSLQGL
301: NSLQALMLKG NTKFSTTIPE NAFKGLKNLM ILVLSNTNIQ GSIPKSLTRL NSLRVLHLEG NNLTGEIPLE FRDVKHLSEL RLNDNSLTGP VPFERDTVWR
401: MRRKLRLYNN AGLCVNRDSD LDDAFGSKSG STVRLCDAET SRPAPSGTVQ HLSREEDGAL PDGATDVSST SKSLGFSYLS AFFLVFPNFI FMLISS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.