Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003549.1-P | Field mustard | extracellular | 95.97 | 23.94 |
| CDY57686 | Canola | extracellular | 95.97 | 23.94 |
| AT1G80080.1 | Thale cress | plasma membrane | 75.81 | 18.95 |
| KRH23585 | Soybean | extracellular, plasma membrane, vacuole | 62.9 | 15.92 |
| VIT_09s0002g07030.t01 | Wine grape | plasma membrane | 61.29 | 15.8 |
| Solyc12g042760.1.1 | Tomato | plasma membrane | 59.68 | 15.45 |
| PGSC0003DMT400073695 | Potato | cytosol | 50.81 | 13.73 |
| GSMUA_Achr7P24750_001 | Banana | cytosol | 47.58 | 12.29 |
| TraesCS2A01G357100.1 | Wheat | plasma membrane | 45.97 | 11.75 |
| HORVU2Hr1G086860.1 | Barley | plasma membrane | 45.97 | 11.56 |
| TraesCS2B01G376300.1 | Wheat | extracellular | 42.74 | 10.84 |
| TraesCS2D01G355900.1 | Wheat | plasma membrane | 42.74 | 10.82 |
| Os01t0623000-00 | Rice | plasma membrane | 42.74 | 10.73 |
| Zm00001d044182_P001 | Maize | vacuole | 43.55 | 10.67 |
| EES01095 | Sorghum | extracellular, plasma membrane, vacuole | 41.94 | 10.32 |
| Bra004336.1-P | Field mustard | extracellular, golgi | 20.16 | 5.8 |
| Bra011040.1-P | Field mustard | extracellular, plasma membrane | 19.35 | 5.44 |
| Bra004719.1-P | Field mustard | extracellular, plasma membrane, vacuole | 19.35 | 5.29 |
| Bra025154.1-P | Field mustard | extracellular, plasma membrane, vacuole | 17.74 | 4.64 |
| Bra019819.1-P | Field mustard | nucleus | 16.94 | 1.4 |
Protein Annotations
| MapMan:35.1 | EnsemblPlantsGene:Bra003550 | EnsemblPlants:Bra003550.1 | EnsemblPlants:Bra003550.1-P | GO:GO:0003674 | GO:GO:0005102 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008356 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0010090 | GO:GO:0010375 | GO:GO:0010376 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0030154 | GO:GO:0033612 | GO:GO:0042277 | GO:GO:0050832 | GO:GO:0071215 | GO:GO:1905034 |
| UniProt:M4CH67 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00025419D5 | : | : |
Description
AT1G80080 (E=3e-059) TMM, AtRLP17 | TMM (TOO MANY MOUTHS); protein binding / receptor
Coordinates
chrA07:-:13741253..13741627
Molecular Weight (calculated)
13641.0 Da
IEP (calculated)
4.300
GRAVY (calculated)
-0.033
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHYGLYCHI LLVFSMICPF TSSFTVITSD TVAPSALIDG PQTGFTMTRD GAHTEPDEQD AVYDIMRATG NDWAAAIPDV CRGRWHGIEC MPDQDNVYHV
101: VSLSFGALSD DTAFPTCDPK RSYI
101: VSLSFGALSD DTAFPTCDPK RSYI
001: MARYEFFRQI FIVLSIVSPL VRSFTVITSD STAPSALIDG PQTGFTMTND GARTEPDEQD AVYDIMRATG NDWAAAIPDV CRGRWHGIEC MPDQDNVYHV
101: VSLSFGALSD DTAFPTCDPQ RSYVSESLTR LKHLKALFFY RCLGRAPQRI PAFLGRLGSS LQTLVLRENG FLGPIPDELG NLTNLKVLDL HKNHLNGSIP
201: LSFNRFSGLR SLDLSGNRLT GSIPGFVLPA LSVLDLNQNL LTGPVPPTLT SCGSLIKIDL SRNRVTGPIP ESINRLNQLV LLDLSYNRLS GPFPSSLQGL
301: NSLQALMLKG NTKFSTTIPE NAFKGLKNLM ILVLSNTNIQ GSIPKSLTRL NSLRVLHLEG NNLTGEIPLE FRDVKHLSEL RLNDNSLTGP VPFERDTVWR
401: MRRKLRLYNN AGLCVNRDSD LDDAFGSKSG STVRLCDAET SRPAPSGTVQ HLSREEDGAL PDGATDVSST SKSLGFSYLS AFFLVFPNFI FMLISS
101: VSLSFGALSD DTAFPTCDPQ RSYVSESLTR LKHLKALFFY RCLGRAPQRI PAFLGRLGSS LQTLVLRENG FLGPIPDELG NLTNLKVLDL HKNHLNGSIP
201: LSFNRFSGLR SLDLSGNRLT GSIPGFVLPA LSVLDLNQNL LTGPVPPTLT SCGSLIKIDL SRNRVTGPIP ESINRLNQLV LLDLSYNRLS GPFPSSLQGL
301: NSLQALMLKG NTKFSTTIPE NAFKGLKNLM ILVLSNTNIQ GSIPKSLTRL NSLRVLHLEG NNLTGEIPLE FRDVKHLSEL RLNDNSLTGP VPFERDTVWR
401: MRRKLRLYNN AGLCVNRDSD LDDAFGSKSG STVRLCDAET SRPAPSGTVQ HLSREEDGAL PDGATDVSST SKSLGFSYLS AFFLVFPNFI FMLISS
Arabidopsis Description
TMMTMM [Source:UniProtKB/TrEMBL;Acc:A0A178WJY8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.