Factsheet for Solyc12g042760.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 7
endoplasmic reticulum 6
vacuole 5
plastid 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073695	Potato	cytosol	84.13	87.8
VIT_09s0002g07030.t01	Wine grape	plasma membrane	60.33	60.08
Bra003550.1-P	Field mustard	extracellular	15.45	59.68
KRH23585	Soybean	extracellular, plasma membrane, vacuole	58.04	56.73
CDY54307	Canola	extracellular	55.32	53.86
AT1G80080.1	Thale cress	plasma membrane	55.74	53.83
Bra003549.1-P	Field mustard	extracellular	55.74	53.72
CDY57686	Canola	extracellular	55.53	53.52
GSMUA_Achr7P24750_001	Banana	cytosol	49.48	49.38
TraesCS2A01G357100.1	Wheat	plasma membrane	44.68	44.12
TraesCS2D01G355900.1	Wheat	plasma membrane	45.09	44.08
TraesCS2B01G376300.1	Wheat	extracellular	44.47	43.56
HORVU2Hr1G086860.1	Barley	plasma membrane	44.47	43.2
Os01t0623000-00	Rice	plasma membrane	44.05	42.71
Zm00001d044182_P001	Maize	vacuole	43.63	41.3
EES01095	Sorghum	extracellular, plasma membrane, vacuole	43.22	41.07
Solyc10g007830.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	31.32	33.94
Solyc05g009990.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	31.32	31.98
Solyc09g072630.2.1	Tomato	extracellular	28.6	31.64
Solyc06g069290.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	29.65	30.54

Protein Annotations

MapMan:11.10.2.3.3	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005102	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008356	GO:GO:0009605
GO:GO:0009607	GO:GO:0009653	GO:GO:0009719	GO:GO:0009737	GO:GO:0009791	GO:GO:0009987
GO:GO:0010090	GO:GO:0010375	GO:GO:0010376	GO:GO:0016020	GO:GO:0016043	GO:GO:0030154
GO:GO:0033612	GO:GO:0042277	GO:GO:0050832	GO:GO:0071215	GO:GO:1905034	InterPro:IPR001611
InterPro:IPR032675	UniProt:K4DF65	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF13855
PRINTS:PR00019	PFscan:PS51450	PANTHER:PTHR44325	SMART:SM00369	SUPFAM:SSF52058	EnsemblPlantsGene:Solyc12g042760.1
EnsemblPlants:Solyc12g042760.1.1	TMHMM:TMhelix	UniParc:UPI0002769426	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:39686923..39688362

Molecular Weight (calculated)

53086.4 Da

IEP (calculated)

8.174

GRAVY (calculated)

-0.043

Length

479 amino acids

Sequence
(BLAST)

001: MALFLSIQIP LLLLSFFFFP LGLSFTVIMS DSGALVDAPQ TGFSMNNNRA RTDPREQEAV YDIMRATGND WAIDIPDVCR GRWHGIECMP DNDNVYHVVS
101: LSFGALSDDT AFPTCDSTHS FISPSVRKLP HLRILFFYRC FSNNPQPIPG FLAQLRPTLQ TLVLRENGFT GPIPNELGNL TRLRVLDLHK NNLDGSIPIS
201: LGRITGLRSL DLSDNKLTGS IPSLTFPQLN ILDLNQNHLT SSIPSTLMSC HSLIKLDLSR NRLSGSIPDS IHHLNNLILL DLSYNSLTSP FPMSLKKLNS
301: LQTLVLNGNP MDSATLPDNT FDGFNSLMIL GLSNMNLQGP MPNSLGRLPK LRVLHLDGNK LNSSIPSSFG NLRNISELRL NNNMLSGPIP FKRDMVWRMR
401: RKMKLSNNDG LCYNKENGLG DDLETLLDSG IGHCGDSKTV PIKTVQHIST LNRSNSNKLL SSLGCFLWSA LVFVLVCLL

Best Arabidopsis Sequence Match ( AT1G80080.1 )
(BLAST)

001: MARYEFFRQI FIVLSIVSPL VRSFTVITSD STAPSALIDG PQTGFTMTND GARTEPDEQD AVYDIMRATG NDWAAAIPDV CRGRWHGIEC MPDQDNVYHV
101: VSLSFGALSD DTAFPTCDPQ RSYVSESLTR LKHLKALFFY RCLGRAPQRI PAFLGRLGSS LQTLVLRENG FLGPIPDELG NLTNLKVLDL HKNHLNGSIP
201: LSFNRFSGLR SLDLSGNRLT GSIPGFVLPA LSVLDLNQNL LTGPVPPTLT SCGSLIKIDL SRNRVTGPIP ESINRLNQLV LLDLSYNRLS GPFPSSLQGL
301: NSLQALMLKG NTKFSTTIPE NAFKGLKNLM ILVLSNTNIQ GSIPKSLTRL NSLRVLHLEG NNLTGEIPLE FRDVKHLSEL RLNDNSLTGP VPFERDTVWR
401: MRRKLRLYNN AGLCVNRDSD LDDAFGSKSG STVRLCDAET SRPAPSGTVQ HLSREEDGAL PDGATDVSST SKSLGFSYLS AFFLVFPNFI FMLISS

Arabidopsis Description

TMMTMM [Source:UniProtKB/TrEMBL;Acc:A0A178WJY8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.