Factsheet for Bra003549.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57686	Canola	extracellular	99.2	99.2
Bra003550.1-P	Field mustard	extracellular	23.94	95.97
AT1G80080.1	Thale cress	plasma membrane	74.04	74.19
VIT_09s0002g07030.t01	Wine grape	plasma membrane	56.74	58.63
PGSC0003DMT400073695	Potato	cytosol	51.71	55.99
Solyc12g042760.1.1	Tomato	plasma membrane	53.72	55.74
KRH23585	Soybean	extracellular, plasma membrane, vacuole	54.73	55.51
GSMUA_Achr7P24750_001	Banana	cytosol	47.48	49.17
HORVU2Hr1G086860.1	Barley	plasma membrane	44.47	44.83
TraesCS2A01G357100.1	Wheat	plasma membrane	43.46	44.54
TraesCS2B01G376300.1	Wheat	extracellular	42.66	43.35
Os01t0623000-00	Rice	plasma membrane	42.86	43.12
TraesCS2D01G355900.1	Wheat	plasma membrane	42.25	42.86
Zm00001d044182_P001	Maize	vacuole	43.06	42.29
EES01095	Sorghum	extracellular, plasma membrane, vacuole	42.86	42.26
Bra004719.1-P	Field mustard	extracellular, plasma membrane, vacuole	30.18	33.04
Bra004336.1-P	Field mustard	extracellular, golgi	27.36	31.55
Bra011040.1-P	Field mustard	extracellular, plasma membrane	27.36	30.84
Bra025154.1-P	Field mustard	extracellular, plasma membrane, vacuole	27.77	29.11
Bra019819.1-P	Field mustard	nucleus	24.95	8.25

Protein Annotations

MapMan:11.10.2.3.3	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra003549	EnsemblPlants:Bra003549.1	EnsemblPlants:Bra003549.1-P	GO:GO:0003674
GO:GO:0005102	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008356	GO:GO:0009605	GO:GO:0009607	GO:GO:0009653	GO:GO:0009719
GO:GO:0009737	GO:GO:0009791	GO:GO:0009987	GO:GO:0010090	GO:GO:0010375	GO:GO:0010376
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0030154	GO:GO:0033612	GO:GO:0042277
GO:GO:0050832	GO:GO:0071215	GO:GO:1905034	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M4CH66	PFAM:PF13855	PRINTS:PR00019	PANTHER:PTHR44325
SMART:SM00369	SUPFAM:SSF52058	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00025419D4	SEG:seg

Description

AT1G80080 (E=2e-207) TMM, AtRLP17 | TMM (TOO MANY MOUTHS); protein binding / receptor

Coordinates

chrA07:-:13739284..13740777

Molecular Weight (calculated)

53887.9 Da

IEP (calculated)

7.938

GRAVY (calculated)

0.004

Length

497 amino acids

Sequence
(BLAST)

001: MAHYGLYCHI LLVFSMICPF TSSFTVITSD TVAPSALIDG PQTGFTMTRD GAHTEPDEQD AVYDIMRATG NDWAAAIPDV CRGRWHGIEC MPDQDNVYHV
101: VSLSFGALSD DTAFPTCDPK RSYISESLTR LKHLKALFFY RCLSRAPQQI PSFLGRLGSS LQTLVLRENG LFGSIPDELG NLTSLKVLDL HKNNLNGSIP
201: LSLNRLSGLR SLDLSVNRLT GSIPGLLLPD LNVLDLNHNL LTGPVPATLS TCGSLIKIDL SHNRVTGPIP DSVNRLNQLV LLDLSYNRLS GPFPSSLQGL
301: NSLQALVLKG NTNFASAIPE NVFKGLNNLM ILVLSNMNLH GSIPGSLTRL TSLRVLHLEG NNLTGSIPME FRGVKDLSEL RLNDNRLTGP VPFEKDTVWR
401: MRRKLRLYNN AGLCVNSESN LDGVFGSTSG SGVRLCEGET KRPGPSGTVQ HLSGAGGGNV TVDRATYVSS GSKSLGFFGL SSFLVVFSYA YMLLSCK

Best Arabidopsis Sequence Match ( AT1G80080.1 )
(BLAST)

001: MARYEFFRQI FIVLSIVSPL VRSFTVITSD STAPSALIDG PQTGFTMTND GARTEPDEQD AVYDIMRATG NDWAAAIPDV CRGRWHGIEC MPDQDNVYHV
101: VSLSFGALSD DTAFPTCDPQ RSYVSESLTR LKHLKALFFY RCLGRAPQRI PAFLGRLGSS LQTLVLRENG FLGPIPDELG NLTNLKVLDL HKNHLNGSIP
201: LSFNRFSGLR SLDLSGNRLT GSIPGFVLPA LSVLDLNQNL LTGPVPPTLT SCGSLIKIDL SRNRVTGPIP ESINRLNQLV LLDLSYNRLS GPFPSSLQGL
301: NSLQALMLKG NTKFSTTIPE NAFKGLKNLM ILVLSNTNIQ GSIPKSLTRL NSLRVLHLEG NNLTGEIPLE FRDVKHLSEL RLNDNSLTGP VPFERDTVWR
401: MRRKLRLYNN AGLCVNRDSD LDDAFGSKSG STVRLCDAET SRPAPSGTVQ HLSREEDGAL PDGATDVSST SKSLGFSYLS AFFLVFPNFI FMLISS

Arabidopsis Description

TMMTMM [Source:UniProtKB/TrEMBL;Acc:A0A178WJY8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.