Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97999 | Canola | extracellular | 26.01 | 93.1 |
| AT1G13230.1 | Thale cress | extracellular | 22.89 | 81.13 |
| Bra025154.1-P | Field mustard | extracellular, plasma membrane, vacuole | 18.76 | 59.49 |
| GSMUA_Achr8P03860_001 | Banana | cytosol | 12.57 | 53.09 |
| Bra004336.1-P | Field mustard | extracellular, golgi | 15.17 | 52.9 |
| KRH70637 | Soybean | extracellular, golgi | 15.77 | 50.86 |
| KRH75532 | Soybean | extracellular, plasma membrane | 15.37 | 49.68 |
| KRG92006 | Soybean | extracellular, plasma membrane | 15.7 | 49.48 |
| VIT_01s0011g02800.t01 | Wine grape | extracellular | 15.64 | 48.65 |
| KRH34777 | Soybean | extracellular, vacuole | 15.5 | 48.64 |
| PGSC0003DMT400002145 | Potato | extracellular | 14.7 | 47.32 |
| Solyc05g009990.2.1 | Tomato | endoplasmic reticulum, golgi, plasma membrane | 14.64 | 46.91 |
| GSMUA_Achr9P00780_001 | Banana | cytosol | 13.44 | 45.29 |
| Solyc06g069290.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 13.97 | 45.16 |
| PGSC0003DMT400010384 | Potato | cytosol | 13.64 | 45.05 |
| GSMUA_Achr10P... | Banana | cytosol | 10.91 | 44.44 |
| GSMUA_AchrUn_... | Banana | cytosol | 10.85 | 44.05 |
| KRH56709 | Soybean | extracellular, plasma membrane | 13.91 | 43.82 |
| KRH03836 | Soybean | extracellular, plasma membrane, vacuole | 13.51 | 42.83 |
| Os01t0110800-01 | Rice | plasma membrane | 12.64 | 42.22 |
| KXG32099 | Sorghum | plasma membrane | 12.57 | 39.21 |
| KXG32097 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 12.38 | 38.91 |
| TraesCS3D01G072400.2 | Wheat | extracellular, plasma membrane | 12.44 | 38.32 |
| HORVU3Hr1G013160.4 | Barley | vacuole | 12.38 | 38.27 |
| TraesCS3D01G072300.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 12.24 | 38.17 |
| TraesCS3B01G086700.2 | Wheat | extracellular, plasma membrane, vacuole | 12.24 | 37.55 |
| Zm00001d040130_P001 | Maize | mitochondrion | 13.24 | 37.48 |
| TraesCS3A01G072700.2 | Wheat | extracellular | 12.18 | 37.35 |
| TraesCS3A01G072600.2 | Wheat | extracellular | 11.98 | 36.66 |
| Bra011040.1-P | Field mustard | extracellular, plasma membrane | 8.92 | 30.39 |
| HORVU1Hr1G008420.1 | Barley | extracellular | 2.73 | 30.37 |
| Bra004719.1-P | Field mustard | extracellular, plasma membrane, vacuole | 8.05 | 26.65 |
| Bra003549.1-P | Field mustard | extracellular | 8.25 | 24.95 |
| Bra003550.1-P | Field mustard | extracellular | 1.4 | 16.94 |
Protein Annotations
| EnsemblPlants:Bra019819.1 | EnsemblPlants:Bra019819.1-P | EnsemblPlantsGene:Bra019819 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF5 | SEG:seg | SUPFAM:SSF52058 | UniParc:UPI000253EBF1 |
| UniProt:M4DTH6 | MapMan:20.4.3.1 | : | : | : | : |
Description
AT1G13220 (E=0.0) LINC2 | LINC2 (LITTLE NUCLEI2)
Coordinates
chrA06:-:4240771..4247627
Molecular Weight (calculated)
172620.0 Da
IEP (calculated)
5.926
GRAVY (calculated)
-0.893
Length
1503 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSPAMTPRSE TRVTNPRNAD RKGKAIAFSE DPVNSTLPPP PIGTLTGEGF SRGEADDMDM GDWRRFREVG LLDEASMERK DREALLEKIS TLEKELYGYQ
0101: HNMGLLLMEN KEWASKHEQL DQALLEAQEI LKREQSSHLY ALTTVEQREE NLRKALGLEK QCVEELEKAL REMQEENNKT RLASEAKLAE ANALVASVTG
0201: RSSDVESKIY SAESKLAEAT RKSSELEMRL KEVETRERVL QQERLSFAKE RESYEETFHK QRDYLHEWEK KLQEKEESMP EQKRSLNHRE EKVNEKEKNL
0301: KLKAKELEER ERKIALSMSK CKETEEDLNK RLQELTAKEK ESCTLQSMLM AKERELRALE EKLIAREGTE IQKLIDDQKA ELADKMLAFE QECEERRKSL
0401: DKELQRKTEE VERQRVEIDH GEEKLQKRNQ ALNKKFERVT EKEMDLEAKS KAIREKEKDI QAEEKRLSLE KQQLLSDKES LMDLQQEIEN IRSEMMKKED
0501: AIREELKNLE IKKGEREEYQ RLQSELKSQI EKSRLHEEFL SKEVENLKQE KERFEKEWEI LDEKQAEYNK ERMRISEEKA KLERFEMLER ERLKKEESAF
0601: RVQIKQELDD IRLQRESFEA NMEHERSALH EKAKLEHSKA LDDLETMRRN LEIEQQKRKE EDEKALQDRL SQFEDKRMKE LSDINRRKQA LNREMEEMVS
0701: KRGALQKESE EIAKHKEKLK EQQAEMHNDI SELSTLSINL KKRREEFARE RGRFLAFVQK LKDCESCGQL ANEFVLSDLQ LPYNEEEAIP PPNGVVSDLP
0801: ESSDESDSCN INKSLDRDAS GSGRRPNMSI LQKCTSILFS PSKRAEHDMD TGKPEQRPSS SLAVNKETKG EKPLPVSTIP DEDEEYTDSR VQETSECSQF
0901: SELQSARRGR GRGRPRKPKP STNPTSSANH ASPGESSKGE VSGHVSGTSE KTTGRGGRKR QHTEDTAAGG GRRKRQQTVA VLPQTPGQKR YNLRRNKTVD
1001: QVPANVENDA AGGEDDADIA ASAPSKDNVE GTSESVVEPL RARRLESSEV RVERVVTVRK TSSPSSLWIP VLKFYNSLLN KTLLINKVHR KTKHAYMLIR
1101: CTGDESLPEV TYSEQAPMDK REREALYSAI QGFVGDSWNG SDLYPDPCGW TPIQGVSCDM YTDLWYVTDL SLGLIHENSL PCSSSLEIRP ELFELKHLRS
1201: LSFFNCFISP MVLAKDGWIN FAANLDSLEF RSNPGLIGKL PETLGNLTNL KSLVVLENEF SEELPASICN LKSLKRMVLA GNTFTGMIPN CLQGLKKLLI
1301: MDLSRNSFSG TLPSSVGDLT SLLKLDLSNN FLEGKLPQEL GLLKNLTLLD VRKNRFSGGL SNNIERMQSL TELVLSDNPM GGEMVGTKWE KMRNLVILDV
1401: SKMGLRGEIP TGLTNLKRLR FLGLNDNNLT GFVPSELEAL PCIGSLYING NNLRGELRFS RKFYEKMGRR FKAWKNPNLC QPFEIVMSES QKHLLPLGVK
1501: PCT
0101: HNMGLLLMEN KEWASKHEQL DQALLEAQEI LKREQSSHLY ALTTVEQREE NLRKALGLEK QCVEELEKAL REMQEENNKT RLASEAKLAE ANALVASVTG
0201: RSSDVESKIY SAESKLAEAT RKSSELEMRL KEVETRERVL QQERLSFAKE RESYEETFHK QRDYLHEWEK KLQEKEESMP EQKRSLNHRE EKVNEKEKNL
0301: KLKAKELEER ERKIALSMSK CKETEEDLNK RLQELTAKEK ESCTLQSMLM AKERELRALE EKLIAREGTE IQKLIDDQKA ELADKMLAFE QECEERRKSL
0401: DKELQRKTEE VERQRVEIDH GEEKLQKRNQ ALNKKFERVT EKEMDLEAKS KAIREKEKDI QAEEKRLSLE KQQLLSDKES LMDLQQEIEN IRSEMMKKED
0501: AIREELKNLE IKKGEREEYQ RLQSELKSQI EKSRLHEEFL SKEVENLKQE KERFEKEWEI LDEKQAEYNK ERMRISEEKA KLERFEMLER ERLKKEESAF
0601: RVQIKQELDD IRLQRESFEA NMEHERSALH EKAKLEHSKA LDDLETMRRN LEIEQQKRKE EDEKALQDRL SQFEDKRMKE LSDINRRKQA LNREMEEMVS
0701: KRGALQKESE EIAKHKEKLK EQQAEMHNDI SELSTLSINL KKRREEFARE RGRFLAFVQK LKDCESCGQL ANEFVLSDLQ LPYNEEEAIP PPNGVVSDLP
0801: ESSDESDSCN INKSLDRDAS GSGRRPNMSI LQKCTSILFS PSKRAEHDMD TGKPEQRPSS SLAVNKETKG EKPLPVSTIP DEDEEYTDSR VQETSECSQF
0901: SELQSARRGR GRGRPRKPKP STNPTSSANH ASPGESSKGE VSGHVSGTSE KTTGRGGRKR QHTEDTAAGG GRRKRQQTVA VLPQTPGQKR YNLRRNKTVD
1001: QVPANVENDA AGGEDDADIA ASAPSKDNVE GTSESVVEPL RARRLESSEV RVERVVTVRK TSSPSSLWIP VLKFYNSLLN KTLLINKVHR KTKHAYMLIR
1101: CTGDESLPEV TYSEQAPMDK REREALYSAI QGFVGDSWNG SDLYPDPCGW TPIQGVSCDM YTDLWYVTDL SLGLIHENSL PCSSSLEIRP ELFELKHLRS
1201: LSFFNCFISP MVLAKDGWIN FAANLDSLEF RSNPGLIGKL PETLGNLTNL KSLVVLENEF SEELPASICN LKSLKRMVLA GNTFTGMIPN CLQGLKKLLI
1301: MDLSRNSFSG TLPSSVGDLT SLLKLDLSNN FLEGKLPQEL GLLKNLTLLD VRKNRFSGGL SNNIERMQSL TELVLSDNPM GGEMVGTKWE KMRNLVILDV
1401: SKMGLRGEIP TGLTNLKRLR FLGLNDNNLT GFVPSELEAL PCIGSLYING NNLRGELRFS RKFYEKMGRR FKAWKNPNLC QPFEIVMSES QKHLLPLGVK
1501: PCT
0001: MFTPQRKQWM SPAMTPRSET HKIGGVTNPR NADRKGKAVA FSDDLVIPTL PPPPIGTLTG QGVSRGHTDD MDMGDWRRFR EVGLLNEASM EKKDQEALLE
0101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
0201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
0301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GTEIQKLIDD QKEVLGSKML
0401: EFELECEEIR KSLDKELQRK IEELERQKVE IDHSEEKLEK RNQAMNKKFD RVNEKEMDLE AKLKTIKERE KIIQAEEKRL SLEKQQLLSD KESLEDLQQE
0501: IEKIRAEMTK KEEMIEEECK SLEIKKEERE EYLRLQSELK SQIEKSRVHE EFLSKEVENL KQEKERFEKE WEILDEKQAV YNKERIRISE EKEKFERFQL
0601: LEGERLKKEE SALRVQIMQE LDDIRLQRES FEANMEHERS ALQEKVKLEQ SKVIDDLEMM RRNLEIELQE RKEQDEKDLL DRMAQFEDKR MAELSDINHQ
0701: KQALNREMEE MMSKRSALQK ESEEIAKHKD KLKEQQVEMH NDISELSTLS INLKKRREVF GRERSRFLAF VQKLKDCGSC GQLVNDFVLS DLQLPSNDEV
0801: AILPPIGVLN DLPGSSNASD SCNIKKSLDG DASGSGGSRR PSMSILQKCT SIIFSPSKRV EHGIDTGKPE QRLSSSVAVG METKGEKPLP VDLRLRPSSS
0901: SIPEEDEEYT DSRVQETSEG SQLSEFQSSR RGRGRPRKAK PALNPTSSVK HASLEESSKD ELSGHVSVTS KKTTGGGGRK RQHIDDTATG GKRRRQQTVA
1001: VLPQTPGQRH YNLRRKKTVD QVPADVEDNA AAGEDDADIA ASAPSKDTVE ETVVETLRAR RIETNADVVS AENNGDVPVA NVEPTVNEDT NEDGDEEEDE
1101: AQDDDNEENQ DDDDDDDGDD DGSPRPGEGS IRKKLWTFLT T
0101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
0201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
0301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GTEIQKLIDD QKEVLGSKML
0401: EFELECEEIR KSLDKELQRK IEELERQKVE IDHSEEKLEK RNQAMNKKFD RVNEKEMDLE AKLKTIKERE KIIQAEEKRL SLEKQQLLSD KESLEDLQQE
0501: IEKIRAEMTK KEEMIEEECK SLEIKKEERE EYLRLQSELK SQIEKSRVHE EFLSKEVENL KQEKERFEKE WEILDEKQAV YNKERIRISE EKEKFERFQL
0601: LEGERLKKEE SALRVQIMQE LDDIRLQRES FEANMEHERS ALQEKVKLEQ SKVIDDLEMM RRNLEIELQE RKEQDEKDLL DRMAQFEDKR MAELSDINHQ
0701: KQALNREMEE MMSKRSALQK ESEEIAKHKD KLKEQQVEMH NDISELSTLS INLKKRREVF GRERSRFLAF VQKLKDCGSC GQLVNDFVLS DLQLPSNDEV
0801: AILPPIGVLN DLPGSSNASD SCNIKKSLDG DASGSGGSRR PSMSILQKCT SIIFSPSKRV EHGIDTGKPE QRLSSSVAVG METKGEKPLP VDLRLRPSSS
0901: SIPEEDEEYT DSRVQETSEG SQLSEFQSSR RGRGRPRKAK PALNPTSSVK HASLEESSKD ELSGHVSVTS KKTTGGGGRK RQHIDDTATG GKRRRQQTVA
1001: VLPQTPGQRH YNLRRKKTVD QVPADVEDNA AAGEDDADIA ASAPSKDTVE ETVVETLRAR RIETNADVVS AENNGDVPVA NVEPTVNEDT NEDGDEEEDE
1101: AQDDDNEENQ DDDDDDDGDD DGSPRPGEGS IRKKLWTFLT T
Arabidopsis Description
LINC2nuclear matrix constituent protein-related [Source:TAIR;Acc:AT1G13220]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.