Factsheet for Zm00001d040130_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32099	Sorghum	plasma membrane	73.63	81.12
KXG32097	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	72.32	80.33
Os01t0110800-01	Rice	plasma membrane	61.02	72.0
HORVU3Hr1G013160.4	Barley	vacuole	61.21	66.87
TraesCS3D01G072400.2	Wheat	extracellular, plasma membrane	61.21	66.6
TraesCS3B01G086700.2	Wheat	extracellular, plasma membrane, vacuole	61.02	66.12
TraesCS3D01G072300.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	59.7	65.77
TraesCS3A01G072600.2	Wheat	extracellular	59.7	64.56
TraesCS3A01G072700.2	Wheat	extracellular	59.32	64.29
GSMUA_Achr8P03860_001	Banana	cytosol	39.17	58.43
Solyc05g009990.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	42.94	48.61
PGSC0003DMT400002145	Potato	extracellular	42.37	48.18
AT1G68780.1	Thale cress	extracellular, golgi	39.17	48.15
AT1G13230.1	Thale cress	extracellular	38.42	48.11
KRH70637	Soybean	extracellular, golgi	42.18	48.07
CDY19386	Canola	cytosol	36.72	47.79
Bra004336.1-P	Field mustard	extracellular, golgi	38.61	47.56
KRH75532	Soybean	extracellular, plasma membrane	41.43	47.31
CDX97999	Canola	extracellular	37.29	47.14
CDX95990	Canola	extracellular, vacuole	38.23	47.1
VIT_01s0011g02800.t01	Wine grape	extracellular	42.56	46.79
CDY33598	Canola	extracellular, golgi	37.85	46.64
KRG92006	Soybean	extracellular, plasma membrane	41.81	46.54
CDY20429	Canola	cytosol	12.62	46.53
HORVU1Hr1G008420.1	Barley	extracellular	11.68	45.93
KRH34777	Soybean	extracellular, vacuole	41.24	45.72
Solyc06g069290.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	39.36	44.95
PGSC0003DMT400010384	Potato	cytosol	38.23	44.62
CDX83542	Canola	extracellular, plasma membrane, vacuole	38.42	43.13
KRH03836	Soybean	extracellular, plasma membrane, vacuole	38.23	42.83
KRH56709	Soybean	extracellular, plasma membrane	38.42	42.77
CDY13577	Canola	vacuole	37.85	42.41
Bra025154.1-P	Field mustard	extracellular, plasma membrane, vacuole	37.85	42.41
AT3G25670.1	Thale cress	extracellular	36.72	41.05
Zm00001d044182_P001	Maize	vacuole	28.81	30.24
Zm00001d002194_P001	Maize	cytosol	8.66	27.88
Zm00001d033230_P001	Maize	extracellular, vacuole	16.38	18.32
Zm00001d011757_P001	Maize	extracellular, plasma membrane	14.88	17.63
Zm00001d038742_P001	Maize	mitochondrion	15.25	17.31
Zm00001d010813_P001	Maize	mitochondrion	14.88	16.99
Bra019819.1-P	Field mustard	nucleus	37.48	13.24

Protein Annotations

EnsemblPlants:Zm00001d040130_P001	EnsemblPlants:Zm00001d040130_T001	EnsemblPlantsGene:Zm00001d040130	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PANTHER:PTHR44325	PANTHER:PTHR44325:SF1	PFAM:PF13855	ProteinID:ONM30618.1	SEG:seg	SignalP:SignalP-noTM
SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI000842949D	UniProt:A0A1D6MNC0	MapMan:35.1	:

Description

fasciated ear3 fasciated ear3

Coordinates

chr3:-:28711131..28713722

Molecular Weight (calculated)

55059.3 Da

IEP (calculated)

5.288

GRAVY (calculated)

0.174

Length

531 amino acids

Sequence
(BLAST)

001: MRRARGRRGL LLLLGVALSA AALLRGCAGQ QGEDGSDAPA AAAAETAPME EKERRALYAA IESFVGKGWN GSGLYPDPCG WSPIQARPCP SCAFPFASIY
101: VTVLFDFLAR GVSCDLFNGL WYPTVMSIGP VLDNSLQCGP DAKFSAQLFD LRRLRTLSFY SCFPASNPTA IPTGSWEKLA GTLETLEFRT NPGLNGAIPA
201: SLGRLASLQS LVLVENNLTG PVPAELGALS RLRRLVLSGN GLSGPIPVTL GNDRRADELL LIVDLSRNYL TGSLPSSLGG LTGLLKMDLS SNLLQGSIPP
301: ELAGLRSLTL LDLRNNSLTG GLPQFVQGMA SLQDLLLSNN PLGGGLPQSG WGALAGLATL DLSNVGLVGA IPGSMAALTG LRFLALDHNR LTGAVPPELA
401: RLPSIGALYL NGNNLTGTLE FSAGFYQRMG RRFASWDNPG LCYNVAAVDA AHAPSGVVVC KDLQEPSVGG GARDGDGDGD AEEDGTKPEA GSSLVASSSS
501: GMPVGSVGGL RYLVVVRGMA AAVLGLVSLL Q

Best Arabidopsis Sequence Match ( AT1G68780.1 )
(BLAST)

001: MKMLRLRKKQ HLVFLLCVWC LVVDWSKAET EESDGSPMEK TEQAALYSTI QGFVGESWNG SYLYPDPCGW TPIQGVTCDI YDELWYVTAL SFGTMKDNSL
101: ACSESPVIRP QLFELKHLKS LSLFNCFTTP NRYLASISDE KWLDLSKSLE RLEIRSNPGL IGELPSVITN LTNLQSLVVL ENKLTGPLPV NLAKLTRLRR
201: LVLSGNRFTG RIPEVYGLTG LLILDVSRNF LSGALPLSVG GLYSLLKLDL SNNYLEGKLP RELESLKNLT LLDLRNNRLS GGLSKEIQEM TSLVELVLSN
301: NRLAGDLTGI KWRNLKNLVV LDLSNTGLKG EIPGSILELK KLRFLGLSNN NLGGKLIPQM ETEMPSLSAL YVNGNNISGE LEFSRYFYER MGRRLGVWGN
401: PNLCYNGDET KNLSDHVPFG VNQCKRIKAD KY

Arabidopsis Description

At1g68780 [Source:UniProtKB/TrEMBL;Acc:Q9CA41]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.