Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 6
- extracellular 6
- vacuole 4
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95990 | Canola | extracellular, vacuole | 84.03 | 84.22 |
| CDY33598 | Canola | extracellular, golgi | 79.63 | 79.81 |
| Bra004336.1-P | Field mustard | extracellular, golgi | 78.24 | 78.42 |
| CDY20429 | Canola | cytosol | 25.23 | 75.69 |
| AT1G13230.1 | Thale cress | extracellular | 54.63 | 55.66 |
| GSMUA_Achr8P03860_001 | Banana | cytosol | 45.6 | 55.34 |
| KRH75532 | Soybean | extracellular, plasma membrane | 55.56 | 51.61 |
| KRH70637 | Soybean | extracellular, golgi | 55.32 | 51.29 |
| VIT_01s0011g02800.t01 | Wine grape | extracellular | 56.25 | 50.31 |
| AT3G25670.1 | Thale cress | extracellular | 54.63 | 49.68 |
| PGSC0003DMT400002145 | Potato | extracellular | 53.7 | 49.68 |
| KRG92006 | Soybean | extracellular, plasma membrane | 54.63 | 49.48 |
| Solyc05g009990.2.1 | Tomato | endoplasmic reticulum, golgi, plasma membrane | 52.78 | 48.61 |
| KRH34777 | Soybean | extracellular, vacuole | 53.7 | 48.43 |
| GSMUA_Achr9P00780_001 | Banana | cytosol | 49.77 | 48.21 |
| PGSC0003DMT400010384 | Potato | cytosol | 50.23 | 47.69 |
| Solyc06g069290.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 51.16 | 47.53 |
| KRH56709 | Soybean | extracellular, plasma membrane | 50.46 | 45.7 |
| GSMUA_AchrUn_... | Banana | cytosol | 39.12 | 45.68 |
| GSMUA_Achr10P... | Banana | cytosol | 38.66 | 45.26 |
| KRH03836 | Soybean | extracellular, plasma membrane, vacuole | 49.54 | 45.15 |
| Os01t0110800-01 | Rice | plasma membrane | 46.3 | 44.44 |
| TraesCS3D01G072300.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 45.6 | 40.87 |
| KXG32099 | Sorghum | plasma membrane | 45.14 | 40.46 |
| KXG32097 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 44.44 | 40.17 |
| HORVU3Hr1G013160.4 | Barley | vacuole | 45.14 | 40.12 |
| TraesCS3B01G086700.2 | Wheat | extracellular, plasma membrane, vacuole | 45.37 | 40.0 |
| TraesCS3D01G072400.2 | Wheat | extracellular, plasma membrane | 45.14 | 39.96 |
| TraesCS3A01G072600.2 | Wheat | extracellular | 44.91 | 39.51 |
| TraesCS3A01G072700.2 | Wheat | extracellular | 44.44 | 39.18 |
| Zm00001d040130_P001 | Maize | mitochondrion | 48.15 | 39.17 |
| AT4G28560.1 | Thale cress | extracellular, vacuole | 31.02 | 29.78 |
| AT2G42800.1 | Thale cress | vacuole | 30.09 | 28.14 |
| AT1G80080.1 | Thale cress | plasma membrane | 32.18 | 28.02 |
| HORVU1Hr1G008420.1 | Barley | extracellular | 7.87 | 25.19 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:843209 | UniProt:A0A178WA38 | ProteinID:AAG52036.1 | ProteinID:AEE34838.1 |
| EMBL:AF361616 | ArrayExpress:AT1G68780 | EnsemblPlantsGene:AT1G68780 | RefSeq:AT1G68780 | TAIR:AT1G68780 | RefSeq:AT1G68780-TAIR-G |
| EnsemblPlants:AT1G68780.1 | TAIR:AT1G68780.1 | EMBL:BT015777 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | RefSeq:NP_564942.1 | ProteinID:OAP14243.1 |
| PFAM:PF13855 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR44325 | PANTHER:PTHR44325:SF1 | UniProt:Q9CA41 | SUPFAM:SSF52058 |
| SignalP:SignalP-noTM | UniParc:UPI00000A9DD7 | SEG:seg | : | : | : |
Description
At1g68780 [Source:UniProtKB/TrEMBL;Acc:Q9CA41]
Coordinates
chr1:-:25831662..25833966
Molecular Weight (calculated)
48460.9 Da
IEP (calculated)
8.355
GRAVY (calculated)
-0.149
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MKMLRLRKKQ HLVFLLCVWC LVVDWSKAET EESDGSPMEK TEQAALYSTI QGFVGESWNG SYLYPDPCGW TPIQGVTCDI YDELWYVTAL SFGTMKDNSL
101: ACSESPVIRP QLFELKHLKS LSLFNCFTTP NRYLASISDE KWLDLSKSLE RLEIRSNPGL IGELPSVITN LTNLQSLVVL ENKLTGPLPV NLAKLTRLRR
201: LVLSGNRFTG RIPEVYGLTG LLILDVSRNF LSGALPLSVG GLYSLLKLDL SNNYLEGKLP RELESLKNLT LLDLRNNRLS GGLSKEIQEM TSLVELVLSN
301: NRLAGDLTGI KWRNLKNLVV LDLSNTGLKG EIPGSILELK KLRFLGLSNN NLGGKLIPQM ETEMPSLSAL YVNGNNISGE LEFSRYFYER MGRRLGVWGN
401: PNLCYNGDET KNLSDHVPFG VNQCKRIKAD KY
101: ACSESPVIRP QLFELKHLKS LSLFNCFTTP NRYLASISDE KWLDLSKSLE RLEIRSNPGL IGELPSVITN LTNLQSLVVL ENKLTGPLPV NLAKLTRLRR
201: LVLSGNRFTG RIPEVYGLTG LLILDVSRNF LSGALPLSVG GLYSLLKLDL SNNYLEGKLP RELESLKNLT LLDLRNNRLS GGLSKEIQEM TSLVELVLSN
301: NRLAGDLTGI KWRNLKNLVV LDLSNTGLKG EIPGSILELK KLRFLGLSNN NLGGKLIPQM ETEMPSLSAL YVNGNNISGE LEFSRYFYER MGRRLGVWGN
401: PNLCYNGDET KNLSDHVPFG VNQCKRIKAD KY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.